Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1076666	0.85[ASN][1000 genomes]
rs1569547	1.00[ASN][1000 genomes]
rs2016647	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2866943	0.84[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs35258493	0.91[EUR][1000 genomes]
rs3787279	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs45474194	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55683344	0.87[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs6016688	0.89[ASN][1000 genomes]
rs6065432	0.87[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs6065434	0.93[AFR][1000 genomes]
rs6072628	0.92[ASN][1000 genomes]
rs6102659	0.97[ASN][1000 genomes]
rs6102662	0.95[ASN][1000 genomes]
rs6102677	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6130026	0.97[ASN][1000 genomes]
rs67506870	0.87[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs722897	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs742293	0.89[ASN][1000 genomes]
rs877431	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv3381	chr20:39925326-40765696	Genic enhancers Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	esv2751913	chr20:40422982-41269321	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv532516	chr20:40451059-41097155	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:40712200-40725800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr20:40714600-40730000	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr20:40715200-40715800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

Quick Search: