Variant report

Variant	rs1076751
Chromosome Location	chr14:33217963-33217964
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10133046	0.89[EUR][1000 genomes]
rs10137532	0.93[TSI][hapmap];0.87[EUR][1000 genomes]
rs10139686	0.87[EUR][1000 genomes]
rs10144064	0.93[TSI][hapmap];0.80[EUR][1000 genomes]
rs1076752	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11845042	0.93[TSI][hapmap];0.84[EUR][1000 genomes]
rs1955511	1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs28475004	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28588446	0.84[EUR][1000 genomes]
rs7141509	0.86[GIH][hapmap];0.93[TSI][hapmap];0.84[EUR][1000 genomes]
rs7494133	0.89[EUR][1000 genomes]
rs8013976	0.89[EUR][1000 genomes]
rs8019267	0.88[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs977967	0.86[GIH][hapmap];0.82[MEX][hapmap];0.93[TSI][hapmap];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045035	chr14:32986003-33543227	Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv542021	chr14:32986003-33543227	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv832765	chr14:33188170-33367348	Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:33194600-33225600	Weak transcription	Aorta	Aorta
2	chr14:33194800-33222200	Weak transcription	Fetal Muscle Leg	muscle
3	chr14:33199000-33218000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr14:33202600-33228800	Weak transcription	Brain Angular Gyrus	brain
5	chr14:33203600-33220600	Weak transcription	Brain Substantia Nigra	brain
6	chr14:33205200-33254600	Weak transcription	Brain Cingulate Gyrus	brain
7	chr14:33206400-33218800	Weak transcription	Brain Hippocampus Middle	brain
8	chr14:33206400-33225000	Weak transcription	Stomach Smooth Muscle	stomach
9	chr14:33207600-33224800	Weak transcription	Left Ventricle	heart
10	chr14:33207600-33225800	Weak transcription	HSMMtube	muscle
11	chr14:33208200-33223200	Weak transcription	Brain Germinal Matrix	brain
12	chr14:33208200-33225800	Weak transcription	Fetal Heart	heart
13	chr14:33214600-33225400	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr14:33215600-33225200	Weak transcription	Right Ventricle	heart
15	chr14:33216000-33225600	Weak transcription	Skeletal Muscle Male	skeletal muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links