Variant report

Variant	rs8013976
Chromosome Location	chr14:33230590-33230591
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10133046	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10137532	0.98[EUR][1000 genomes]
rs10139686	0.94[EUR][1000 genomes]
rs10144064	0.85[CEU][hapmap];0.90[EUR][1000 genomes]
rs1076751	0.89[EUR][1000 genomes]
rs1076752	0.89[EUR][1000 genomes]
rs11845042	0.85[CEU][hapmap];0.94[EUR][1000 genomes]
rs2300843	0.94[YRI][hapmap];0.87[AFR][1000 genomes]
rs28588446	0.94[EUR][1000 genomes]
rs7141509	0.85[CEU][hapmap];0.94[EUR][1000 genomes]
rs7494133	0.85[CEU][hapmap];0.81[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8019267	0.87[CEU][hapmap];0.92[EUR][1000 genomes]
rs977966	0.85[YRI][hapmap]
rs977967	0.85[CEU][hapmap];0.83[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045035	chr14:32986003-33543227	Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv542021	chr14:32986003-33543227	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv832765	chr14:33188170-33367348	Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:33205200-33254600	Weak transcription	Brain Cingulate Gyrus	brain
2	chr14:33225200-33257600	Weak transcription	Fetal Muscle Leg	muscle
3	chr14:33225400-33242800	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr14:33226200-33257000	Weak transcription	Left Ventricle	heart
5	chr14:33226600-33232000	Weak transcription	Fetal Heart	heart
6	chr14:33227200-33242800	Weak transcription	Stomach Smooth Muscle	stomach
7	chr14:33229200-33230800	Weak transcription	Aorta	Aorta
8	chr14:33229200-33242600	Weak transcription	HSMMtube	muscle
9	chr14:33229400-33230600	Weak transcription	Brain Angular Gyrus	brain
10	chr14:33230000-33231200	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr14:33230000-33234000	Enhancers	Muscle Satellite Cultured Cells	--
12	chr14:33230200-33231000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr14:33230200-33231200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr14:33230400-33230600	Flanking Active TSS	Osteobl	bone
15	chr14:33230400-33230800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr14:33230400-33230800	Enhancers	NH-A	brain
17	chr14:33230400-33231200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr14:33230400-33231200	Enhancers	NHDF-Ad	bronchial

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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