Variant report

Variant	rs11845042
Chromosome Location	chr14:33245068-33245069
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10133046	0.94[EUR][1000 genomes]
rs10137532	0.92[GIH][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes]
rs10139686	0.96[EUR][1000 genomes]
rs10144064	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.89[LWK][hapmap];0.85[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1076751	0.93[TSI][hapmap];0.84[EUR][1000 genomes]
rs1076752	0.84[EUR][1000 genomes]
rs28588446	1.00[EUR][1000 genomes]
rs7141509	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7494133	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs8013976	0.85[CEU][hapmap];0.94[EUR][1000 genomes]
rs8019267	0.87[EUR][1000 genomes]
rs977967	1.00[CEU][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045035	chr14:32986003-33543227	Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv542021	chr14:32986003-33543227	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv832765	chr14:33188170-33367348	Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:33205200-33254600	Weak transcription	Brain Cingulate Gyrus	brain
2	chr14:33225200-33257600	Weak transcription	Fetal Muscle Leg	muscle
3	chr14:33226200-33257000	Weak transcription	Left Ventricle	heart
4	chr14:33239200-33278600	Weak transcription	Right Ventricle	heart
5	chr14:33241000-33253600	Weak transcription	Colon Smooth Muscle	Colon
6	chr14:33241000-33268000	Weak transcription	Psoas Muscle	Psoas
7	chr14:33241200-33259600	Weak transcription	Fetal Muscle Trunk	muscle
8	chr14:33241800-33253800	Weak transcription	Brain Substantia Nigra	brain
9	chr14:33241800-33256200	Weak transcription	Brain Germinal Matrix	brain
10	chr14:33241800-33259800	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr14:33242200-33253200	Weak transcription	Fetal Heart	heart
12	chr14:33242200-33258000	Weak transcription	Brain Hippocampus Middle	brain
13	chr14:33242600-33246200	Strong transcription	HSMMtube	muscle
14	chr14:33242600-33247400	Weak transcription	Pancreas	Pancrea
15	chr14:33242800-33259400	Weak transcription	Brain Angular Gyrus	brain
16	chr14:33243200-33260000	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr14:33243600-33257800	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr14:33243600-33260800	Weak transcription	Brain Anterior Caudate	brain
19	chr14:33243800-33257800	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr14:33243800-33259000	Weak transcription	Fetal Brain Female	brain
21	chr14:33244000-33251200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr14:33244000-33257800	Weak transcription	Stomach Smooth Muscle	stomach
23	chr14:33244800-33245200	Strong transcription	Aorta	Aorta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links