Variant report

Variant	rs10767571
Chromosome Location	chr11:26716217-26716218
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10767570	0.90[JPT][hapmap]
rs10767573	0.81[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs10835054	0.87[ASW][hapmap];0.83[LWK][hapmap]
rs10835061	1.00[YRI][hapmap]
rs11029650	0.87[ASW][hapmap];0.83[LWK][hapmap]
rs11029687	0.81[CHB][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];0.94[MKK][hapmap];1.00[YRI][hapmap]
rs12225814	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1565760	0.87[ASW][hapmap];0.83[LWK][hapmap]
rs3924551	0.90[JPT][hapmap]
rs3924552	0.88[ASW][hapmap];0.90[JPT][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap]
rs4328172	0.81[JPT][hapmap];0.85[LWK][hapmap];1.00[YRI][hapmap]
rs7940432	0.89[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044544	chr11:26506962-26967285	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv916187	chr11:26576875-27328603	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26704600-26719200	Weak transcription	Fetal Intestine Small	intestine
2	chr11:26705200-26717200	Weak transcription	Fetal Intestine Large	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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