Variant report

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10767570	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10767571	0.88[ASW][hapmap];0.90[JPT][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap]
rs10767573	0.86[JPT][hapmap];1.00[YRI][hapmap]
rs10835013	0.80[CHD][hapmap]
rs10835040	0.82[CHD][hapmap]
rs10835054	0.83[LWK][hapmap]
rs10835061	1.00[YRI][hapmap]
rs11029648	0.80[CHD][hapmap]
rs11029650	0.80[CHD][hapmap];0.83[LWK][hapmap]
rs11029666	0.85[CHD][hapmap]
rs11029672	0.81[CEU][hapmap]
rs11029673	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11029687	0.86[JPT][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap]
rs12225814	0.87[ASN][1000 genomes]
rs12795885	0.82[CHD][hapmap]
rs1565760	0.80[CHD][hapmap];0.83[LWK][hapmap]
rs1567352	0.80[CHD][hapmap]
rs3550	0.87[ASW][hapmap];0.85[CHD][hapmap]
rs3924551	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4244525	0.81[CHB][hapmap];0.81[CHD][hapmap]
rs4328172	0.81[JPT][hapmap];0.85[LWK][hapmap];1.00[YRI][hapmap]
rs4369354	0.81[CHB][hapmap];0.85[CHD][hapmap]
rs4497357	0.82[CHD][hapmap]
rs4551716	0.81[CHB][hapmap];0.85[CHD][hapmap]
rs6484224	0.82[CHD][hapmap]
rs6484237	0.85[CHD][hapmap]
rs7107869	0.80[CHD][hapmap]
rs7940432	0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7943086	0.82[CHD][hapmap]
rs7943714	0.80[CHD][hapmap]
rs7946841	0.82[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044544	chr11:26506962-26967285	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv916187	chr11:26576875-27328603	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3924552	LGR4	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26701800-26705200	Strong transcription	Fetal Intestine Large	intestine
2	chr11:26704600-26719200	Weak transcription	Fetal Intestine Small	intestine

Quick Search: