Variant report

Variant	rs4551716
Chromosome Location	chr11:26694842-26694843
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 136 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:134)

rs_ID	r²[population]
rs10430934	0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs10501058	0.95[JPT][hapmap]
rs10767555	0.83[CHD][hapmap];0.86[JPT][hapmap]
rs10767558	0.90[ASN][1000 genomes]
rs10767560	0.85[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs10767564	0.93[ASN][1000 genomes]
rs10767565	0.93[ASN][1000 genomes]
rs10767566	0.93[ASN][1000 genomes]
rs10767570	0.85[CHB][hapmap]
rs10835009	0.90[ASN][1000 genomes]
rs10835011	0.90[ASN][1000 genomes]
rs10835012	0.89[ASN][1000 genomes]
rs10835013	0.91[CHB][hapmap];0.95[CHD][hapmap];0.84[GIH][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs10835014	0.90[CHB][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs10835015	0.90[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs10835017	0.83[ASN][1000 genomes]
rs10835018	0.90[ASN][1000 genomes]
rs10835020	0.91[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs10835022	0.90[ASN][1000 genomes]
rs10835023	0.91[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs10835024	0.91[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs10835025	0.94[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs10835026	0.88[ASN][1000 genomes]
rs10835027	0.95[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs10835028	0.90[ASN][1000 genomes]
rs10835029	0.90[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs10835030	0.91[ASN][1000 genomes]
rs10835032	0.91[ASN][1000 genomes]
rs10835033	0.90[ASN][1000 genomes]
rs10835034	0.93[ASN][1000 genomes]
rs10835035	0.93[ASN][1000 genomes]
rs10835036	0.95[ASN][1000 genomes]
rs10835037	0.95[ASN][1000 genomes]
rs10835038	0.93[ASN][1000 genomes]
rs10835039	0.94[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs10835040	0.95[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs10835041	0.95[ASN][1000 genomes]
rs10835044	0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs10835048	0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10835053	0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10835055	0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11029623	0.91[CHB][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs11029638	0.88[ASN][1000 genomes]
rs11029645	0.90[ASN][1000 genomes]
rs11029646	0.90[ASN][1000 genomes]
rs11029647	0.90[ASN][1000 genomes]
rs11029648	0.91[CHB][hapmap];0.95[CHD][hapmap];0.84[GIH][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs11029650	0.91[CHB][hapmap];0.95[CHD][hapmap];0.84[GIH][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs11029651	0.90[ASN][1000 genomes]
rs11029654	0.90[CHB][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs11029656	0.94[ASN][1000 genomes]
rs11029659	0.94[ASN][1000 genomes]
rs11029666	0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs11029672	0.86[CHB][hapmap]
rs11029673	0.80[ASN][1000 genomes]
rs1135506	0.95[CHB][hapmap];0.83[ASN][1000 genomes]
rs1135507	0.95[CHB][hapmap];0.83[ASN][1000 genomes]
rs11512173	0.90[ASN][1000 genomes]
rs11529839	0.89[ASN][1000 genomes]
rs12361861	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12795885	0.95[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1565760	0.91[CHB][hapmap];0.95[CHD][hapmap];0.84[GIH][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs1567352	0.91[CHB][hapmap];0.95[CHD][hapmap];0.84[GIH][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs1848564	0.88[ASN][1000 genomes]
rs1848565	0.88[ASN][1000 genomes]
rs2029713	0.93[ASN][1000 genomes]
rs2295	0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2350211	0.89[ASN][1000 genomes]
rs2839797	0.90[ASN][1000 genomes]
rs28403415	0.90[ASN][1000 genomes]
rs35290179	0.94[ASN][1000 genomes]
rs3550	0.95[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35760232	0.90[ASN][1000 genomes]
rs3924551	0.81[CHB][hapmap];0.85[CHD][hapmap]
rs3924552	0.81[CHB][hapmap];0.85[CHD][hapmap]
rs3937884	0.88[ASN][1000 genomes]
rs4244525	1.00[CHB][hapmap];0.95[CHD][hapmap];0.87[GIH][hapmap];0.83[ASN][1000 genomes]
rs4255495	0.94[ASN][1000 genomes]
rs4268466	0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs4288713	0.94[ASN][1000 genomes]
rs4298854	0.84[ASN][1000 genomes]
rs4316465	0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs4317942	0.91[ASN][1000 genomes]
rs4320913	0.93[ASN][1000 genomes]
rs4369354	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.94[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4396242	0.93[ASN][1000 genomes]
rs4420219	0.84[ASN][1000 genomes]
rs4469843	0.93[ASN][1000 genomes]
rs4474389	0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs4480494	0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs4497357	0.95[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs4498947	0.93[ASN][1000 genomes]
rs4551717	0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs4553331	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs4615979	0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4922764	0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs6484220	0.91[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs6484223	0.90[ASN][1000 genomes]
rs6484224	0.95[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs6484225	0.94[ASN][1000 genomes]
rs6484226	0.90[ASN][1000 genomes]
rs6484227	0.94[ASN][1000 genomes]
rs6484228	0.94[ASN][1000 genomes]
rs6484229	0.94[ASN][1000 genomes]
rs6484230	0.93[ASN][1000 genomes]
rs6484231	0.93[ASN][1000 genomes]
rs6484232	0.94[ASN][1000 genomes]
rs6484235	0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6484237	0.95[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs6484238	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs7106245	0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7107528	0.92[ASN][1000 genomes]
rs7107869	0.91[CHB][hapmap];0.95[CHD][hapmap];0.84[GIH][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs7112022	0.90[ASN][1000 genomes]
rs7116352	0.82[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs7122563	0.90[ASN][1000 genomes]
rs7124390	0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7124404	0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7479072	0.93[ASN][1000 genomes]
rs7925028	0.91[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs7929519	0.93[ASN][1000 genomes]
rs7929611	0.92[ASN][1000 genomes]
rs7932168	0.91[CHB][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs7933233	0.93[ASN][1000 genomes]
rs7933405	0.95[CHB][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs7938755	0.93[ASN][1000 genomes]
rs7940432	0.87[CHD][hapmap]
rs7941987	0.93[ASN][1000 genomes]
rs7942467	0.93[ASN][1000 genomes]
rs7942671	0.90[ASN][1000 genomes]
rs7942776	0.93[ASN][1000 genomes]
rs7943086	0.95[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7943714	0.91[CHB][hapmap];0.95[CHD][hapmap];0.84[GIH][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs7946841	0.95[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044544	chr11:26506962-26967285	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv916187	chr11:26576875-27328603	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26688600-26702400	Weak transcription	Fetal Intestine Small	intestine
2	chr11:26694000-26695200	Enhancers	Fetal Heart	heart
3	chr11:26694000-26695200	Strong transcription	Fetal Intestine Large	intestine

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