Variant report

Variant	rs4244525
Chromosome Location	chr11:26696343-26696344
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:26695454..26697214-chr11:26724438..26726286,2	MCF-7	breast:

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs10430934	0.95[CHB][hapmap]
rs10767555	0.82[CHD][hapmap]
rs10767560	0.85[CHB][hapmap]
rs10767570	0.85[CHB][hapmap]
rs10835013	0.91[CHB][hapmap];0.90[CHD][hapmap]
rs10835014	0.90[CHB][hapmap]
rs10835015	0.90[CHB][hapmap]
rs10835020	0.91[CHB][hapmap]
rs10835023	0.91[CHB][hapmap]
rs10835024	0.91[CHB][hapmap]
rs10835025	0.94[CHB][hapmap]
rs10835027	0.95[CHB][hapmap]
rs10835029	0.90[CHB][hapmap]
rs10835039	0.94[CHB][hapmap]
rs10835040	0.95[CHB][hapmap];0.93[CHD][hapmap];0.80[GIH][hapmap]
rs10835044	0.95[CHB][hapmap]
rs10835048	0.95[CHB][hapmap];0.81[ASN][1000 genomes]
rs10835049	0.95[JPT][hapmap]
rs10835051	0.91[JPT][hapmap]
rs10835053	0.82[ASN][1000 genomes]
rs10835055	0.95[CHB][hapmap];0.82[ASN][1000 genomes]
rs10835057	0.91[GIH][hapmap];0.95[JPT][hapmap];0.87[MEX][hapmap];0.81[TSI][hapmap];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11029621	0.82[JPT][hapmap]
rs11029623	0.91[CHB][hapmap]
rs11029648	0.91[CHB][hapmap];0.90[CHD][hapmap]
rs11029650	0.91[CHB][hapmap];0.90[CHD][hapmap]
rs11029654	0.90[CHB][hapmap]
rs11029662	0.95[JPT][hapmap]
rs11029665	0.91[JPT][hapmap]
rs11029666	0.95[CHB][hapmap];0.95[CHD][hapmap];0.83[GIH][hapmap];0.82[ASN][1000 genomes]
rs11029672	0.87[ASW][hapmap];0.86[CHB][hapmap];0.89[LWK][hapmap];0.83[YRI][hapmap];0.90[AFR][1000 genomes]
rs1135506	0.95[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1135507	0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs12361861	0.82[ASN][1000 genomes]
rs12795885	0.95[CHB][hapmap];0.93[CHD][hapmap];0.80[GIH][hapmap]
rs1565760	0.91[CHB][hapmap];0.90[CHD][hapmap]
rs1567352	0.91[CHB][hapmap];0.90[CHD][hapmap]
rs2131691	0.82[JPT][hapmap]
rs2295	0.95[CHB][hapmap]
rs3550	0.95[CHB][hapmap];0.95[CHD][hapmap];0.85[GIH][hapmap];0.82[ASN][1000 genomes]
rs3924551	0.81[CHB][hapmap];0.81[CHD][hapmap]
rs3924552	0.81[CHB][hapmap];0.81[CHD][hapmap]
rs4268466	0.90[CHB][hapmap]
rs4298854	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4316465	0.95[CHB][hapmap]
rs4369354	1.00[CHB][hapmap];0.95[CHD][hapmap];0.87[GIH][hapmap];0.83[ASN][1000 genomes]
rs4474389	0.95[CHB][hapmap]
rs4480494	0.95[CHB][hapmap]
rs4497357	0.95[CHB][hapmap];0.93[CHD][hapmap];0.80[GIH][hapmap]
rs4514365	0.95[JPT][hapmap]
rs4551716	1.00[CHB][hapmap];0.95[CHD][hapmap];0.87[GIH][hapmap];0.83[ASN][1000 genomes]
rs4551717	0.95[CHB][hapmap]
rs4553331	0.95[CHB][hapmap]
rs4600161	0.95[JPT][hapmap]
rs4615979	0.95[CHB][hapmap];0.82[ASN][1000 genomes]
rs4922764	0.95[CHB][hapmap]
rs4923373	0.91[JPT][hapmap]
rs6484220	0.91[CHB][hapmap]
rs6484224	0.95[CHB][hapmap];0.93[CHD][hapmap];0.83[GIH][hapmap]
rs6484235	0.95[CHB][hapmap];0.81[ASN][1000 genomes]
rs6484236	0.91[JPT][hapmap]
rs6484237	0.95[CHB][hapmap];0.95[CHD][hapmap];0.80[GIH][hapmap];0.81[ASN][1000 genomes]
rs6484238	0.95[CHB][hapmap]
rs7101581	0.82[JPT][hapmap]
rs7106245	0.95[CHB][hapmap]
rs7107869	0.91[CHB][hapmap];0.90[CHD][hapmap]
rs7115642	0.82[JPT][hapmap]
rs7116352	0.82[CHB][hapmap]
rs7119386	0.82[JPT][hapmap]
rs7124390	0.95[CHB][hapmap]
rs7124404	0.95[CHB][hapmap]
rs7925028	0.91[CHB][hapmap]
rs7932168	0.91[CHB][hapmap]
rs7933405	0.95[CHB][hapmap]
rs7940432	0.83[CHD][hapmap]
rs7943086	0.95[CHB][hapmap];0.93[CHD][hapmap];0.83[GIH][hapmap]
rs7943714	0.91[CHB][hapmap];0.90[CHD][hapmap]
rs7946841	0.95[CHB][hapmap];0.93[CHD][hapmap];0.83[GIH][hapmap]
rs7947969	0.95[JPT][hapmap]
rs967490	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044544	chr11:26506962-26967285	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv916187	chr11:26576875-27328603	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26688600-26702400	Weak transcription	Fetal Intestine Small	intestine
2	chr11:26695200-26701800	Weak transcription	Fetal Intestine Large	intestine

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