Variant report

Variant	rs10835023
Chromosome Location	chr11:26640105-26640106
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 132 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:128)

rs_ID	r²[population]
rs10430934	0.95[CHB][hapmap];0.95[JPT][hapmap];0.87[YRI][hapmap];0.88[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs10501058	0.91[JPT][hapmap]
rs10767555	0.86[CHB][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs10767558	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10767560	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10767564	0.84[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs10767565	0.84[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs10767566	0.96[ASN][1000 genomes]
rs10835009	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10835011	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10835012	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10835013	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10835014	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10835015	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10835017	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10835018	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10835020	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10835022	0.91[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10835024	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10835025	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10835026	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10835027	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10835028	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10835029	0.94[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10835030	0.99[ASN][1000 genomes]
rs10835032	0.86[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs10835033	0.92[ASN][1000 genomes]
rs10835034	0.84[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs10835035	0.84[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs10835036	0.83[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs10835037	0.83[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs10835038	0.83[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs10835039	1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs10835040	0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[YRI][hapmap];0.83[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs10835041	0.96[ASN][1000 genomes]
rs10835044	0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs10835048	0.95[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs10835053	0.91[ASN][1000 genomes]
rs10835055	0.95[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs11029623	0.81[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11029638	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11029645	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029646	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029647	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029648	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029650	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11029651	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029654	0.91[CHB][hapmap];0.84[JPT][hapmap];0.82[YRI][hapmap];0.90[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs11029656	0.81[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs11029659	0.83[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs11029666	0.95[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs1135506	0.95[CHB][hapmap]
rs1135507	0.95[CHB][hapmap]
rs11512173	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11529839	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12361861	0.91[ASN][1000 genomes]
rs12795885	0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[YRI][hapmap];0.83[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs1565760	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1567352	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1848564	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1848565	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2029713	0.97[ASN][1000 genomes]
rs2087971	0.85[ASN][1000 genomes]
rs2295	0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs2350211	0.94[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2839797	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28403415	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35290179	0.83[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs3550	0.95[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs35760232	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3937884	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4244525	0.91[CHB][hapmap]
rs4255495	0.83[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs4268466	0.90[CHB][hapmap];0.95[JPT][hapmap];0.83[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs4288713	0.83[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs4316465	0.95[CHB][hapmap];0.95[JPT][hapmap];0.83[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs4317942	0.92[ASN][1000 genomes]
rs4320913	0.97[ASN][1000 genomes]
rs4369354	0.91[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs4396242	0.97[ASN][1000 genomes]
rs4420219	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4469843	0.84[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs4474389	0.95[CHB][hapmap];0.95[JPT][hapmap];0.84[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs4480494	0.95[CHB][hapmap];0.95[JPT][hapmap];0.83[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs4497357	0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[YRI][hapmap];0.81[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs4498947	0.84[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs4551716	0.91[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs4551717	0.95[CHB][hapmap];0.95[JPT][hapmap];0.83[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs4553331	0.90[CHB][hapmap];0.89[JPT][hapmap]
rs4615979	0.95[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs4922764	0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs6484220	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6484223	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6484224	0.95[CHB][hapmap];0.90[JPT][hapmap];0.88[YRI][hapmap];0.82[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs6484225	0.84[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs6484226	0.91[ASN][1000 genomes]
rs6484227	0.84[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs6484228	0.84[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs6484229	0.83[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs6484230	0.82[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs6484231	0.84[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs6484232	0.83[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs6484235	0.95[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs6484237	0.95[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs6484238	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs7106245	0.95[CHB][hapmap];0.95[JPT][hapmap];0.81[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7107528	0.88[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs7107869	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7112022	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7116352	0.82[CHB][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs7122563	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7124390	0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs7124404	0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs7479072	0.84[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs7925028	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7929519	0.84[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs7929611	0.82[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7932168	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[JPT][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7933233	0.84[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs7933405	1.00[CHB][hapmap];0.90[JPT][hapmap];0.81[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7938755	0.97[ASN][1000 genomes]
rs7941987	0.84[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs7942467	0.84[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs7942671	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7942776	0.84[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7943086	0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[YRI][hapmap];0.94[ASN][1000 genomes]
rs7943714	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7946841	0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[YRI][hapmap];0.84[AFR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044544	chr11:26506962-26967285	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1050121	chr11:26532655-26675303	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv540974	chr11:26532655-26675303	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv916187	chr11:26576875-27328603	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26600400-26643000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr11:26636400-26642200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr11:26639800-26640200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr11:26639800-26640400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr11:26639800-26640400	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr11:26639800-26640400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr11:26639800-26640600	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr11:26639800-26640600	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr11:26639800-26640600	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr11:26640000-26640400	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr11:26640000-26640600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr11:26640000-26640600	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr11:26640000-26640600	Enhancers	iPS-20b Cell Line	embryonic stem cell

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