Variant report

Variant	rs6484223
Chromosome Location	chr11:26643220-26643221
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 126 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:122)

rs_ID	r²[population]
rs10430934	0.88[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs10767555	0.87[ASN][1000 genomes]
rs10767558	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10767560	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10767564	0.84[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs10767565	0.84[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs10767566	0.96[ASN][1000 genomes]
rs10835009	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10835011	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10835012	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10835013	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10835014	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10835015	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10835017	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10835018	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10835020	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10835022	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10835023	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10835024	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10835025	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10835026	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10835027	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10835028	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10835029	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10835030	0.99[ASN][1000 genomes]
rs10835032	0.86[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs10835033	0.92[ASN][1000 genomes]
rs10835034	0.84[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs10835035	0.84[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs10835036	0.83[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs10835037	0.83[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs10835038	0.83[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs10835039	0.82[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs10835040	0.83[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs10835041	0.96[ASN][1000 genomes]
rs10835044	0.96[ASN][1000 genomes]
rs10835048	0.93[ASN][1000 genomes]
rs10835053	0.91[ASN][1000 genomes]
rs10835055	0.91[ASN][1000 genomes]
rs11029623	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11029638	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11029645	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029646	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029647	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029648	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029650	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11029651	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029654	0.90[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs11029656	0.81[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs11029659	0.83[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs11029666	0.91[ASN][1000 genomes]
rs11512173	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11529839	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12361861	0.91[ASN][1000 genomes]
rs12795885	0.83[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs1565760	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1567352	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1848564	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1848565	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2029713	0.97[ASN][1000 genomes]
rs2087971	0.85[ASN][1000 genomes]
rs2295	0.96[ASN][1000 genomes]
rs2350211	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2839797	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28403415	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35290179	0.83[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs3550	0.91[ASN][1000 genomes]
rs35760232	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3937884	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4255495	0.83[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs4268466	0.83[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs4288713	0.83[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs4316465	0.83[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs4317942	0.92[ASN][1000 genomes]
rs4320913	0.97[ASN][1000 genomes]
rs4369354	0.90[ASN][1000 genomes]
rs4396242	0.97[ASN][1000 genomes]
rs4420219	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4469843	0.84[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs4474389	0.84[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs4480494	0.83[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs4497357	0.81[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs4498947	0.84[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs4551716	0.90[ASN][1000 genomes]
rs4551717	0.83[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs4615979	0.91[ASN][1000 genomes]
rs4922764	0.96[ASN][1000 genomes]
rs6484220	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6484224	0.82[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs6484225	0.84[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs6484226	0.91[ASN][1000 genomes]
rs6484227	0.84[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs6484228	0.84[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs6484229	0.83[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs6484230	0.82[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs6484231	0.84[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs6484232	0.83[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs6484235	0.93[ASN][1000 genomes]
rs6484237	0.93[ASN][1000 genomes]
rs7106245	0.81[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7107528	0.88[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs7107869	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7112022	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7116352	0.83[ASN][1000 genomes]
rs7122563	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7124390	0.96[ASN][1000 genomes]
rs7124404	0.96[ASN][1000 genomes]
rs7479072	0.84[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs7925028	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7929519	0.84[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs7929611	0.82[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7932168	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7933233	0.84[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs7933405	0.81[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7938755	0.97[ASN][1000 genomes]
rs7941987	0.84[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs7942467	0.84[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs7942671	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7942776	0.84[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7943086	0.94[ASN][1000 genomes]
rs7943714	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7946841	0.84[AFR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044544	chr11:26506962-26967285	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1050121	chr11:26532655-26675303	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv540974	chr11:26532655-26675303	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv916187	chr11:26576875-27328603	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26641600-26644800	Enhancers	HMEC	breast
2	chr11:26642000-26645000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr11:26642000-26645200	Enhancers	NHEK	skin
4	chr11:26642200-26643600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr11:26642200-26643800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr11:26642200-26644800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr11:26642200-26644800	Enhancers	NHDF-Ad	bronchial
8	chr11:26642200-26645000	Enhancers	Muscle Satellite Cultured Cells	--
9	chr11:26642200-26645000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr11:26642200-26645000	Enhancers	Placenta Amnion	Placenta Amnion
11	chr11:26642200-26645200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr11:26642200-26645200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr11:26642200-26645200	Enhancers	Hela-S3	cervix
14	chr11:26642800-26643600	Enhancers	A549	lung
15	chr11:26643000-26643600	Weak transcription	Fetal Intestine Small	intestine
16	chr11:26643000-26644400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr11:26643200-26644200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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