Variant report

Variant	rs11029666
Chromosome Location	chr11:26692435-26692436
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 135 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:133)

rs_ID	r²[population]
rs10430934	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs10501058	0.95[JPT][hapmap]
rs10767555	0.82[CHB][hapmap];0.82[CHD][hapmap];0.90[JPT][hapmap]
rs10767558	0.91[ASN][1000 genomes]
rs10767560	0.90[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs10767564	0.94[ASN][1000 genomes]
rs10767565	0.93[ASN][1000 genomes]
rs10767566	0.93[ASN][1000 genomes]
rs10767570	0.81[CHB][hapmap]
rs10835009	0.91[ASN][1000 genomes]
rs10835011	0.91[ASN][1000 genomes]
rs10835012	0.90[ASN][1000 genomes]
rs10835013	0.95[CHB][hapmap];0.95[CHD][hapmap];0.84[GIH][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs10835014	0.95[CHB][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs10835015	0.95[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs10835017	0.83[ASN][1000 genomes]
rs10835018	0.91[ASN][1000 genomes]
rs10835020	0.95[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs10835022	0.91[ASN][1000 genomes]
rs10835023	0.95[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs10835024	0.95[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs10835025	0.94[CHB][hapmap];0.94[JPT][hapmap];0.83[YRI][hapmap];0.88[ASN][1000 genomes]
rs10835026	0.88[ASN][1000 genomes]
rs10835027	0.95[CHB][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs10835028	0.91[ASN][1000 genomes]
rs10835029	0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs10835030	0.92[ASN][1000 genomes]
rs10835032	0.92[ASN][1000 genomes]
rs10835033	0.91[ASN][1000 genomes]
rs10835034	0.94[ASN][1000 genomes]
rs10835035	0.94[ASN][1000 genomes]
rs10835036	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10835037	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10835038	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10835039	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10835040	0.93[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10835041	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10835044	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10835048	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10835053	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10835055	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029623	0.95[CHB][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes]
rs11029638	0.89[ASN][1000 genomes]
rs11029645	0.91[ASN][1000 genomes]
rs11029646	0.91[ASN][1000 genomes]
rs11029647	0.91[ASN][1000 genomes]
rs11029648	0.95[CHB][hapmap];0.95[CHD][hapmap];0.84[GIH][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs11029650	0.95[CHB][hapmap];0.95[CHD][hapmap];0.84[GIH][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs11029651	0.91[ASN][1000 genomes]
rs11029654	0.95[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs11029656	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11029659	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11029672	0.81[CHB][hapmap]
rs1135506	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs1135507	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs11512173	0.90[ASN][1000 genomes]
rs11529839	0.90[ASN][1000 genomes]
rs12361861	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12795885	0.93[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1565760	0.95[CHB][hapmap];0.95[CHD][hapmap];0.84[GIH][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs1567352	0.95[CHB][hapmap];0.95[CHD][hapmap];0.84[GIH][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs1848564	0.88[ASN][1000 genomes]
rs1848565	0.88[ASN][1000 genomes]
rs2029713	0.94[ASN][1000 genomes]
rs2295	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2350211	0.90[ASN][1000 genomes]
rs2839797	0.91[ASN][1000 genomes]
rs28403415	0.91[ASN][1000 genomes]
rs35290179	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3550	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35760232	0.90[ASN][1000 genomes]
rs3924551	0.85[CHD][hapmap]
rs3924552	0.85[CHD][hapmap]
rs3937884	0.88[ASN][1000 genomes]
rs4244525	0.95[CHB][hapmap];0.95[CHD][hapmap];0.83[GIH][hapmap];0.82[ASN][1000 genomes]
rs4255495	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4268466	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4288713	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4298854	0.83[ASN][1000 genomes]
rs4316465	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4317942	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4320913	0.94[ASN][1000 genomes]
rs4369354	0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs4396242	0.94[ASN][1000 genomes]
rs4420219	0.85[ASN][1000 genomes]
rs4469843	0.94[ASN][1000 genomes]
rs4474389	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs4480494	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4497357	0.93[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4498947	0.94[ASN][1000 genomes]
rs4551716	0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs4551717	0.93[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.95[TSI][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4553331	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap]
rs4615979	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4922764	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6484220	0.95[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs6484223	0.91[ASN][1000 genomes]
rs6484224	0.93[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.89[MEX][hapmap];0.89[TSI][hapmap];0.94[ASN][1000 genomes]
rs6484225	0.95[ASN][1000 genomes]
rs6484226	0.91[ASN][1000 genomes]
rs6484227	0.95[ASN][1000 genomes]
rs6484228	0.95[ASN][1000 genomes]
rs6484229	0.95[ASN][1000 genomes]
rs6484230	0.93[ASN][1000 genomes]
rs6484231	0.94[ASN][1000 genomes]
rs6484232	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6484235	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6484237	0.80[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6484238	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7106245	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7107528	0.93[ASN][1000 genomes]
rs7107869	0.95[CHB][hapmap];0.95[CHD][hapmap];0.84[GIH][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs7112022	0.91[ASN][1000 genomes]
rs7116352	0.96[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7122563	0.91[ASN][1000 genomes]
rs7124390	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7124404	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7479072	0.94[ASN][1000 genomes]
rs7925028	0.95[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs7929519	0.94[ASN][1000 genomes]
rs7929611	0.93[ASN][1000 genomes]
rs7932168	0.95[CHB][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs7933233	0.94[ASN][1000 genomes]
rs7933405	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7938755	0.94[ASN][1000 genomes]
rs7940432	0.87[CHD][hapmap]
rs7941987	0.94[ASN][1000 genomes]
rs7942467	0.94[ASN][1000 genomes]
rs7942671	0.91[ASN][1000 genomes]
rs7942776	0.93[ASN][1000 genomes]
rs7943086	0.93[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.89[TSI][hapmap];0.91[ASN][1000 genomes]
rs7943714	0.95[CHB][hapmap];0.95[CHD][hapmap];0.84[GIH][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs7946841	0.93[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.89[TSI][hapmap];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044544	chr11:26506962-26967285	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv916187	chr11:26576875-27328603	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26688600-26702400	Weak transcription	Fetal Intestine Small	intestine
2	chr11:26691400-26692800	Strong transcription	Fetal Intestine Large	intestine
3	chr11:26692200-26692600	Weak transcription	Fetal Heart	heart

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