Variant report

Variant	rs28403415
Chromosome Location	chr11:26631123-26631124
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:26629270..26631902-chr11:26633613..26635854,2	K562	blood:

Extended variants
information (count: 126 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:122)

rs_ID	r²[population]
rs10430934	0.86[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs10767555	0.87[ASN][1000 genomes]
rs10767558	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10767560	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10767564	0.82[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs10767565	0.82[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs10767566	0.96[ASN][1000 genomes]
rs10835009	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10835011	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10835012	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10835013	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10835014	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10835015	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10835017	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10835018	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10835020	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10835022	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10835023	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10835024	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10835025	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10835026	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10835027	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10835028	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10835029	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10835030	0.99[ASN][1000 genomes]
rs10835032	0.86[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs10835033	0.92[ASN][1000 genomes]
rs10835034	0.82[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs10835035	0.82[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs10835036	0.81[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs10835037	0.81[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs10835038	0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs10835039	0.96[ASN][1000 genomes]
rs10835040	0.81[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs10835041	0.96[ASN][1000 genomes]
rs10835044	0.96[ASN][1000 genomes]
rs10835048	0.93[ASN][1000 genomes]
rs10835053	0.91[ASN][1000 genomes]
rs10835055	0.91[ASN][1000 genomes]
rs11029623	0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11029638	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11029645	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029646	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029647	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029648	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029650	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11029651	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029654	0.88[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs11029656	0.95[ASN][1000 genomes]
rs11029659	0.81[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs11029666	0.91[ASN][1000 genomes]
rs11512173	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11529839	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12361861	0.91[ASN][1000 genomes]
rs12795885	0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs1565760	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1567352	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1848564	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1848565	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2029713	0.97[ASN][1000 genomes]
rs2087971	0.85[ASN][1000 genomes]
rs2295	0.96[ASN][1000 genomes]
rs2350211	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2839797	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35290179	0.81[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs3550	0.91[ASN][1000 genomes]
rs35760232	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3937884	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4255495	0.81[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs4268466	0.81[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs4288713	0.81[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs4316465	0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs4317942	0.92[ASN][1000 genomes]
rs4320913	0.97[ASN][1000 genomes]
rs4369354	0.90[ASN][1000 genomes]
rs4396242	0.97[ASN][1000 genomes]
rs4420219	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4469843	0.82[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs4474389	0.82[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs4480494	0.81[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs4497357	0.96[ASN][1000 genomes]
rs4498947	0.82[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs4551716	0.90[ASN][1000 genomes]
rs4551717	0.81[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs4615979	0.91[ASN][1000 genomes]
rs4922764	0.96[ASN][1000 genomes]
rs6484220	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6484223	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6484224	0.94[ASN][1000 genomes]
rs6484225	0.82[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs6484226	0.91[ASN][1000 genomes]
rs6484227	0.82[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs6484228	0.82[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs6484229	0.81[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs6484230	0.93[ASN][1000 genomes]
rs6484231	0.82[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs6484232	0.81[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs6484235	0.93[ASN][1000 genomes]
rs6484237	0.93[ASN][1000 genomes]
rs7106245	0.96[ASN][1000 genomes]
rs7107528	0.86[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs7107869	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7112022	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7116352	0.83[ASN][1000 genomes]
rs7122563	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7124390	0.96[ASN][1000 genomes]
rs7124404	0.96[ASN][1000 genomes]
rs7479072	0.82[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs7925028	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7929519	0.82[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs7929611	0.96[ASN][1000 genomes]
rs7932168	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7933233	0.82[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs7933405	0.96[ASN][1000 genomes]
rs7938755	0.97[ASN][1000 genomes]
rs7941987	0.82[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs7942467	0.82[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs7942671	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7942776	0.82[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7943086	0.94[ASN][1000 genomes]
rs7943714	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7946841	0.82[AFR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044544	chr11:26506962-26967285	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1050121	chr11:26532655-26675303	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv540974	chr11:26532655-26675303	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv916187	chr11:26576875-27328603	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26600400-26643000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr11:26607600-26635400	Weak transcription	Adipose Nuclei	Adipose
3	chr11:26629400-26631200	Enhancers	GM12878-XiMat	blood
4	chr11:26630000-26631200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr11:26630800-26635400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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