Variant report

Variant	rs1135507
Chromosome Location	chr11:26690902-26690903
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10430934	1.00[CHB][hapmap]
rs10767555	0.82[CHB][hapmap]
rs10767560	0.91[CHB][hapmap]
rs10767570	0.81[CHB][hapmap]
rs10835013	0.95[CHB][hapmap]
rs10835014	0.95[CHB][hapmap]
rs10835015	0.95[CHB][hapmap]
rs10835020	0.95[CHB][hapmap]
rs10835023	0.95[CHB][hapmap]
rs10835024	0.95[CHB][hapmap]
rs10835025	0.95[CHB][hapmap]
rs10835027	0.95[CHB][hapmap]
rs10835029	0.95[CHB][hapmap]
rs10835039	1.00[CHB][hapmap]
rs10835040	1.00[CHB][hapmap]
rs10835044	1.00[CHB][hapmap]
rs10835048	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs10835049	0.96[JPT][hapmap]
rs10835051	0.91[JPT][hapmap];0.80[YRI][hapmap]
rs10835053	0.83[ASN][1000 genomes]
rs10835055	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs10835057	0.92[CEU][hapmap];0.95[JPT][hapmap];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11029623	0.95[CHB][hapmap]
rs11029648	0.95[CHB][hapmap]
rs11029650	0.95[CHB][hapmap]
rs11029654	0.95[CHB][hapmap]
rs11029662	0.96[JPT][hapmap]
rs11029665	0.91[JPT][hapmap]
rs11029666	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs11029672	0.81[CHB][hapmap]
rs1135506	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12361861	0.83[ASN][1000 genomes]
rs12795885	1.00[CHB][hapmap]
rs1565760	0.95[CHB][hapmap]
rs1567352	0.95[CHB][hapmap]
rs2131691	0.82[JPT][hapmap]
rs2295	1.00[CHB][hapmap]
rs3550	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs4244525	0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs4268466	0.95[CHB][hapmap]
rs4298854	0.96[ASN][1000 genomes]
rs4316465	1.00[CHB][hapmap]
rs4369354	0.95[CHB][hapmap];0.83[ASN][1000 genomes]
rs4474389	1.00[CHB][hapmap]
rs4480494	1.00[CHB][hapmap]
rs4497357	1.00[CHB][hapmap]
rs4514365	0.96[JPT][hapmap]
rs4551716	0.95[CHB][hapmap];0.83[ASN][1000 genomes]
rs4551717	1.00[CHB][hapmap]
rs4553331	0.95[CHB][hapmap]
rs4600161	0.95[JPT][hapmap];0.80[YRI][hapmap]
rs4615979	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs4922764	1.00[CHB][hapmap]
rs4923373	0.91[JPT][hapmap];0.80[YRI][hapmap]
rs6484220	0.95[CHB][hapmap]
rs6484224	1.00[CHB][hapmap]
rs6484235	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs6484236	0.91[JPT][hapmap];0.80[YRI][hapmap]
rs6484237	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs6484238	1.00[CHB][hapmap]
rs7106245	1.00[CHB][hapmap]
rs7107869	0.95[CHB][hapmap]
rs7116352	0.87[CHB][hapmap]
rs7119386	0.82[JPT][hapmap]
rs7124390	1.00[CHB][hapmap]
rs7124404	1.00[CHB][hapmap]
rs7925028	0.95[CHB][hapmap]
rs7932168	0.95[CHB][hapmap]
rs7933405	1.00[CHB][hapmap]
rs7943086	1.00[CHB][hapmap]
rs7943714	0.95[CHB][hapmap]
rs7946841	1.00[CHB][hapmap]
rs7947969	0.95[JPT][hapmap];0.80[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044544	chr11:26506962-26967285	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv916187	chr11:26576875-27328603	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26688600-26691400	Weak transcription	Fetal Intestine Large	intestine
2	chr11:26688600-26702400	Weak transcription	Fetal Intestine Small	intestine

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