Variant report

Variant	rs6484238
Chromosome Location	chr11:26674862-26674863
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10430934	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10501058	0.95[JPT][hapmap]
rs10767555	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs10767560	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs10767570	0.81[CHB][hapmap]
rs10835013	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs10835014	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs10835015	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs10835020	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs10835023	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs10835024	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs10835025	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs10835027	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs10835029	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs10835039	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10835040	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10835044	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10835048	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10835055	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11029623	0.95[CHB][hapmap];0.91[JPT][hapmap]
rs11029648	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs11029650	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs11029654	0.96[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap]
rs11029666	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11029672	0.81[CHB][hapmap]
rs1135506	1.00[CHB][hapmap]
rs1135507	1.00[CHB][hapmap]
rs12795885	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1565760	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs1567352	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs2295	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3550	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4244525	0.95[CHB][hapmap]
rs4268466	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs4316465	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4369354	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs4474389	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4480494	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4497357	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4551716	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs4551717	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4553331	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap]
rs4615979	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4922764	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6484220	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs6484224	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs6484235	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs6484237	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7106245	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7107869	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs7116352	0.83[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs7124390	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7124404	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7925028	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs7932168	0.95[CHB][hapmap];0.91[JPT][hapmap]
rs7933405	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs7943086	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7943714	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs7946841	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044544	chr11:26506962-26967285	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1050121	chr11:26532655-26675303	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv540974	chr11:26532655-26675303	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv916187	chr11:26576875-27328603	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26673200-26676600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links