Variant report

Variant	rs10501058
Chromosome Location	chr11:26667813-26667814
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs10430934	0.95[JPT][hapmap]
rs10767555	0.81[JPT][hapmap]
rs10767560	0.91[JPT][hapmap]
rs10835013	0.90[JPT][hapmap]
rs10835014	0.89[JPT][hapmap]
rs10835015	0.91[JPT][hapmap]
rs10835020	0.91[JPT][hapmap]
rs10835023	0.91[JPT][hapmap]
rs10835024	0.90[JPT][hapmap]
rs10835025	0.89[JPT][hapmap]
rs10835027	0.90[JPT][hapmap]
rs10835029	0.95[JPT][hapmap]
rs10835039	0.95[JPT][hapmap]
rs10835040	0.95[JPT][hapmap]
rs10835041	0.91[AFR][1000 genomes]
rs10835043	1.00[CEU][hapmap];0.86[CHB][hapmap];0.93[CHD][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10835044	0.95[JPT][hapmap]
rs10835045	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10835048	0.95[JPT][hapmap];0.81[AFR][1000 genomes]
rs10835049	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs10835051	0.87[CHB][hapmap];0.81[CHD][hapmap]
rs10835053	0.81[AFR][1000 genomes]
rs10835055	0.95[JPT][hapmap];0.83[YRI][hapmap]
rs11029623	0.86[JPT][hapmap];0.92[YRI][hapmap]
rs11029648	0.90[JPT][hapmap]
rs11029650	0.90[JPT][hapmap]
rs11029654	0.84[JPT][hapmap]
rs11029662	0.96[CHB][hapmap]
rs11029665	0.82[CHB][hapmap]
rs11029666	0.95[JPT][hapmap]
rs12795885	0.95[JPT][hapmap]
rs1565760	0.90[JPT][hapmap]
rs1567352	0.90[JPT][hapmap];1.00[YRI][hapmap]
rs16916148	0.83[YRI][hapmap]
rs2131692	0.94[ASN][1000 genomes]
rs2295	0.95[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs3550	0.95[JPT][hapmap]
rs4268466	0.95[JPT][hapmap]
rs4316465	0.95[JPT][hapmap]
rs4369354	0.95[JPT][hapmap]
rs4396242	0.87[AFR][1000 genomes]
rs4474389	0.95[JPT][hapmap]
rs4480494	0.95[JPT][hapmap]
rs4497357	0.95[JPT][hapmap]
rs4514365	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs4551716	0.95[JPT][hapmap]
rs4551717	0.95[JPT][hapmap]
rs4553331	0.89[JPT][hapmap]
rs4600161	0.96[CHB][hapmap]
rs4615979	0.95[JPT][hapmap]
rs4922764	0.95[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs4923373	0.87[CHB][hapmap];0.81[CHD][hapmap]
rs6484220	0.91[JPT][hapmap];0.92[YRI][hapmap]
rs6484224	0.90[JPT][hapmap]
rs6484235	0.95[JPT][hapmap];0.83[YRI][hapmap];0.81[AFR][1000 genomes]
rs6484236	0.87[CHB][hapmap];0.81[CHD][hapmap]
rs6484237	0.95[JPT][hapmap];0.82[AFR][1000 genomes]
rs6484238	0.95[JPT][hapmap]
rs7106245	0.95[JPT][hapmap]
rs7107869	0.90[JPT][hapmap]
rs7116352	0.91[JPT][hapmap]
rs7124390	0.95[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs7124404	0.95[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs7925028	0.91[JPT][hapmap]
rs7932168	0.86[JPT][hapmap];0.91[YRI][hapmap]
rs7933405	0.90[JPT][hapmap]
rs7943086	0.95[JPT][hapmap]
rs7943714	0.90[JPT][hapmap]
rs7946841	0.95[JPT][hapmap]
rs7947969	1.00[CHB][hapmap];0.93[CHD][hapmap];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044544	chr11:26506962-26967285	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1050121	chr11:26532655-26675303	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv540974	chr11:26532655-26675303	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv916187	chr11:26576875-27328603	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv553907	chr11:26654581-26670850	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv897141	chr11:26659406-26674033	Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv467779	chr11:26661690-26674033	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv553908	chr11:26661690-26674033	Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv275492	chr11:26663394-26667813	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26645200-26671600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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