Variant report

Variant	rs4553331
Chromosome Location	chr11:26662751-26662752
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10430934	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs10501058	0.89[JPT][hapmap]
rs10767555	0.83[JPT][hapmap]
rs10767560	0.90[CHB][hapmap];0.89[JPT][hapmap]
rs10835013	0.89[CHB][hapmap];0.89[JPT][hapmap]
rs10835014	0.94[CHB][hapmap];0.87[JPT][hapmap]
rs10835015	0.90[CHB][hapmap];0.89[JPT][hapmap]
rs10835020	0.90[CHB][hapmap];0.89[JPT][hapmap]
rs10835023	0.90[CHB][hapmap];0.89[JPT][hapmap]
rs10835024	0.90[CHB][hapmap];0.88[JPT][hapmap]
rs10835025	0.89[CHB][hapmap];0.88[JPT][hapmap]
rs10835027	0.89[CHB][hapmap];0.88[JPT][hapmap]
rs10835029	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs10835039	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap]
rs10835040	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap]
rs10835044	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap]
rs10835048	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap]
rs10835055	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap]
rs10835057	0.85[CHB][hapmap]
rs11029623	0.90[CHB][hapmap];0.84[JPT][hapmap]
rs11029648	0.89[CHB][hapmap];0.89[JPT][hapmap]
rs11029650	0.89[CHB][hapmap];0.89[JPT][hapmap]
rs11029654	1.00[CEU][hapmap];0.90[CHB][hapmap];0.80[JPT][hapmap]
rs11029666	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap]
rs11029672	0.95[CHB][hapmap]
rs1135506	0.95[CHB][hapmap]
rs1135507	0.95[CHB][hapmap]
rs12795885	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap]
rs1565760	0.89[CHB][hapmap];0.89[JPT][hapmap]
rs1567352	0.89[CHB][hapmap];0.89[JPT][hapmap]
rs2295	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap]
rs3550	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap]
rs4244525	0.95[CHB][hapmap]
rs4268466	1.00[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap]
rs4316465	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs4369354	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs4474389	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap]
rs4480494	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs4497357	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap]
rs4551716	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs4551717	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap]
rs4615979	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap]
rs4922764	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap]
rs6484220	0.90[CHB][hapmap];0.89[JPT][hapmap]
rs6484224	1.00[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap]
rs6484235	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs6484237	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap]
rs6484238	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap]
rs7106245	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap]
rs7107869	0.89[CHB][hapmap];0.89[JPT][hapmap]
rs7116352	0.83[CEU][hapmap];0.80[CHB][hapmap];0.94[JPT][hapmap]
rs7124390	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap]
rs7124404	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap]
rs7925028	0.90[CHB][hapmap];0.89[JPT][hapmap]
rs7932168	0.90[CHB][hapmap];0.84[JPT][hapmap]
rs7933405	1.00[CEU][hapmap];0.94[CHB][hapmap];0.88[JPT][hapmap]
rs7943086	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap]
rs7943714	0.89[CHB][hapmap];0.89[JPT][hapmap]
rs7946841	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044544	chr11:26506962-26967285	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1050121	chr11:26532655-26675303	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv540974	chr11:26532655-26675303	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv916187	chr11:26576875-27328603	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv553907	chr11:26654581-26670850	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv897141	chr11:26659406-26674033	Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv467779	chr11:26661690-26674033	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv553908	chr11:26661690-26674033	Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26645200-26671600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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