Variant report

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10430934	0.84[CHB][hapmap]
rs10835014	0.84[CHB][hapmap]
rs10835025	0.84[CHB][hapmap]
rs10835027	0.84[CHB][hapmap]
rs10835029	0.80[CHB][hapmap]
rs10835039	0.83[CEU][hapmap]
rs10835040	0.81[CHB][hapmap]
rs10835044	0.81[CHB][hapmap]
rs10835048	0.81[CHB][hapmap]
rs10835049	0.81[JPT][hapmap]
rs10835055	0.80[CHB][hapmap]
rs10835057	0.91[CHB][hapmap];0.87[CHD][hapmap];0.81[JPT][hapmap];0.81[ASN][1000 genomes]
rs11029662	0.81[JPT][hapmap]
rs11029666	0.81[CHB][hapmap]
rs1135506	0.81[CHB][hapmap]
rs1135507	0.81[CHB][hapmap]
rs12795885	0.81[CHB][hapmap]
rs3550	0.81[CHB][hapmap]
rs3924552	0.81[CEU][hapmap]
rs4244525	0.87[ASW][hapmap];0.86[CHB][hapmap];0.89[LWK][hapmap];0.83[YRI][hapmap];0.90[AFR][1000 genomes]
rs4369354	0.86[CHB][hapmap]
rs4474389	0.81[CHB][hapmap]
rs4480494	0.81[CHB][hapmap]
rs4497357	0.81[CHB][hapmap]
rs4514365	0.81[JPT][hapmap]
rs4551716	0.86[CHB][hapmap]
rs4551717	0.81[CHB][hapmap]
rs4553331	0.95[CHB][hapmap]
rs4615979	0.81[CHB][hapmap]
rs4922764	0.81[CHB][hapmap]
rs6484224	0.81[CHB][hapmap]
rs6484235	0.85[CHB][hapmap]
rs6484237	0.81[CHB][hapmap]
rs6484238	0.81[CHB][hapmap]
rs7106245	0.81[CHB][hapmap]
rs7124390	0.81[CHB][hapmap]
rs7124404	0.81[CHB][hapmap]
rs7943086	0.81[CHB][hapmap];0.80[TSI][hapmap]
rs7946841	0.81[CHB][hapmap];0.80[TSI][hapmap]
rs7947969	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044544	chr11:26506962-26967285	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv916187	chr11:26576875-27328603	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11029672	LGR4	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26688600-26702400	Weak transcription	Fetal Intestine Small	intestine
2	chr11:26695200-26701800	Weak transcription	Fetal Intestine Large	intestine
3	chr11:26699800-26701200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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