Variant report

Variant	rs11029687
Chromosome Location	chr11:26742602-26742603
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10767570	0.86[JPT][hapmap]
rs10767571	0.81[CHB][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];0.94[MKK][hapmap];1.00[YRI][hapmap]
rs10767573	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10835054	0.83[LWK][hapmap]
rs10835061	1.00[CEU][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11029650	0.83[LWK][hapmap]
rs12576268	0.88[CEU][hapmap]
rs1565760	0.83[LWK][hapmap]
rs3924551	0.86[JPT][hapmap]
rs3924552	0.86[JPT][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap]
rs4322349	0.88[CEU][hapmap]
rs4328172	1.00[ASW][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.86[JPT][hapmap];0.85[LWK][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs4477399	0.88[CEU][hapmap]
rs4923380	0.87[CEU][hapmap]
rs7940432	0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044544	chr11:26506962-26967285	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv916187	chr11:26576875-27328603	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11029687	FAM199X	trans	cerebellum	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26738600-26743600	Active TSS	Fetal Intestine Large	intestine
2	chr11:26739600-26743400	Weak transcription	Fetal Heart	heart
3	chr11:26739600-26743600	Active TSS	Fetal Intestine Small	intestine
4	chr11:26741200-26742800	Weak transcription	Duodenum Mucosa	Duodenum
5	chr11:26741800-26742800	Weak transcription	Fetal Kidney	kidney
6	chr11:26742400-26746000	Enhancers	Liver	Liver
7	chr11:26742600-26743400	Active TSS	Right Atrium	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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