Variant report

Variant	rs10769152
Chromosome Location	chr11:45492522-45492523
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10742757	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1157784	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1157785	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1488664	0.90[EUR][1000 genomes]
rs1994513	0.95[EUR][1000 genomes]
rs1994514	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1994515	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2122839	0.95[EUR][1000 genomes]
rs2198152	0.90[EUR][1000 genomes]
rs2863702	0.90[EUR][1000 genomes]
rs4442522	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4755989	0.90[EUR][1000 genomes]
rs4755990	1.00[EUR][1000 genomes]
rs4755994	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6485626	0.90[EUR][1000 genomes]
rs7111035	1.00[EUR][1000 genomes]
rs7114666	1.00[EUR][1000 genomes]
rs7949832	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs896337	0.82[EUR][1000 genomes]
rs896341	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs896343	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs901899	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs901901	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs991986	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530619	chr11:45294176-45553928	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1045831	chr11:45419113-45580407	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1049520	chr11:45430802-45494235	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
4	nsv541026	chr11:45430802-45494235	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	nsv1053919	chr11:45457920-45506491	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
6	nsv541027	chr11:45457920-45506491	Flanking Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
7	nsv897310	chr11:45487041-45631953	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45489600-45493000	Enhancers	Adipose Nuclei	Adipose
2	chr11:45490200-45492600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr11:45490200-45493000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr11:45490200-45494600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr11:45490200-45494600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr11:45490200-45495200	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr11:45490200-45495200	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr11:45490200-45510800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr11:45490400-45495000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr11:45490400-45495000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr11:45491000-45493000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr11:45491000-45493000	Enhancers	Ovary	ovary
13	chr11:45491400-45492600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr11:45491400-45492800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr11:45491400-45492800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr11:45491400-45493000	Enhancers	Fetal Muscle Trunk	muscle
17	chr11:45491600-45492600	Weak transcription	Spleen	Spleen
18	chr11:45491800-45492600	Enhancers	Fetal Stomach	stomach
19	chr11:45492000-45492800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr11:45492000-45492800	Enhancers	Fetal Lung	lung
21	chr11:45492200-45493000	Enhancers	Pancreas	Pancrea
22	chr11:45492400-45492800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr11:45492400-45493000	Enhancers	Osteobl	bone

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