Variant report

Variant	rs4755990
Chromosome Location	chr11:45478839-45478840
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10742757	1.00[EUR][1000 genomes]
rs10769152	1.00[EUR][1000 genomes]
rs1157784	1.00[EUR][1000 genomes]
rs1157785	1.00[EUR][1000 genomes]
rs1488664	0.90[EUR][1000 genomes]
rs1994513	0.95[EUR][1000 genomes]
rs1994514	0.95[EUR][1000 genomes]
rs1994515	0.95[EUR][1000 genomes]
rs2122839	0.95[EUR][1000 genomes]
rs2198152	0.90[EUR][1000 genomes]
rs2863702	0.90[EUR][1000 genomes]
rs4442522	1.00[EUR][1000 genomes]
rs4755989	0.90[EUR][1000 genomes]
rs4755994	1.00[EUR][1000 genomes]
rs6485626	0.90[EUR][1000 genomes]
rs7111035	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7114666	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7949832	1.00[EUR][1000 genomes]
rs896337	0.82[EUR][1000 genomes]
rs896341	0.95[EUR][1000 genomes]
rs896343	0.95[EUR][1000 genomes]
rs901899	0.95[EUR][1000 genomes]
rs901901	0.95[EUR][1000 genomes]
rs991986	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530619	chr11:45294176-45553928	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1045831	chr11:45419113-45580407	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1049520	chr11:45430802-45494235	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
4	nsv541026	chr11:45430802-45494235	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	nsv1050657	chr11:45455431-45484320	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
6	nsv1035430	chr11:45455431-45487231	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
7	nsv1035254	chr11:45457183-45487231	Bivalent Enhancer ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
8	nsv1053919	chr11:45457920-45506491	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
9	nsv541027	chr11:45457920-45506491	Flanking Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45478200-45479000	Enhancers	HepG2	liver
2	chr11:45478200-45479600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr11:45478400-45483200	Weak transcription	Right Atrium	heart
4	chr11:45478600-45479200	Flanking Active TSS	Osteobl	bone
5	chr11:45478600-45480200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr11:45478600-45480400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr11:45478600-45485000	Weak transcription	Pancreas	Pancrea
8	chr11:45478800-45479200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr11:45478800-45479400	Enhancers	Fetal Lung	lung
10	chr11:45478800-45479800	Enhancers	Placenta	Placenta
11	chr11:45478800-45480000	Enhancers	Primary neutrophils fromperipheralblood	blood
12	chr11:45478800-45480400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links