Variant report

Variant	rs896343
Chromosome Location	chr11:45479752-45479753
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10742757	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10769152	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1157784	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1157785	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1488664	0.95[EUR][1000 genomes]
rs1994513	1.00[EUR][1000 genomes]
rs1994514	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1994515	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2122839	0.90[EUR][1000 genomes]
rs2198152	0.95[EUR][1000 genomes]
rs2863702	0.86[EUR][1000 genomes]
rs4442522	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4755989	0.95[EUR][1000 genomes]
rs4755990	0.95[EUR][1000 genomes]
rs4755994	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6485626	0.95[EUR][1000 genomes]
rs7111035	0.95[EUR][1000 genomes]
rs7114666	0.95[EUR][1000 genomes]
rs7949832	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs896337	0.85[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs896341	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs901899	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs901901	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs991986	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530619	chr11:45294176-45553928	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1045831	chr11:45419113-45580407	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1049520	chr11:45430802-45494235	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
4	nsv541026	chr11:45430802-45494235	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	nsv1050657	chr11:45455431-45484320	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
6	nsv1035430	chr11:45455431-45487231	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
7	nsv1035254	chr11:45457183-45487231	Bivalent Enhancer ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
8	nsv1053919	chr11:45457920-45506491	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
9	nsv541027	chr11:45457920-45506491	Flanking Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45478400-45483200	Weak transcription	Right Atrium	heart
2	chr11:45478600-45480200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr11:45478600-45480400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr11:45478600-45485000	Weak transcription	Pancreas	Pancrea
5	chr11:45478800-45479800	Enhancers	Placenta	Placenta
6	chr11:45478800-45480000	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr11:45478800-45480400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr11:45479000-45480000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr11:45479000-45480200	Enhancers	HMEC	breast
10	chr11:45479200-45480000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr11:45479200-45480200	Enhancers	Osteobl	bone
12	chr11:45479400-45480200	Weak transcription	Fetal Lung	lung
13	chr11:45479400-45480400	Enhancers	Spleen	Spleen

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