Variant report

Variant	rs10770117
Chromosome Location	chr11:10447917-10447918
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10743141	0.83[ASN][1000 genomes]
rs11042789	0.83[ASN][1000 genomes]
rs11042793	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12288723	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1450274	0.85[ASN][1000 genomes]
rs3741044	0.83[ASN][1000 genomes]
rs4910133	0.85[ASN][1000 genomes]
rs7103886	0.80[ASN][1000 genomes]
rs7103998	0.88[ASN][1000 genomes]
rs7109187	0.98[ASN][1000 genomes]
rs763471	0.92[ASN][1000 genomes]
rs9666586	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10447600-10448600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr11:10447600-10448600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr11:10447800-10448600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr11:10447800-10448600	Enhancers	Muscle Satellite Cultured Cells	--
5	chr11:10447800-10448600	Enhancers	NHDF-Ad	bronchial

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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