Variant report

Variant	rs7103886
Chromosome Location	chr11:10434078-10434079
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:10433682..10435838-chr11:10460593..10462614,2	K562	blood:
2	chr11:10433858..10436750-chr11:10437236..10438791,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10743141	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10770117	0.80[ASN][1000 genomes]
rs11042789	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11042793	0.81[ASN][1000 genomes]
rs12288723	0.81[ASN][1000 genomes]
rs1450274	0.96[ASN][1000 genomes]
rs3741044	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4910133	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6484290	0.83[JPT][hapmap]
rs7103998	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7109187	0.82[ASN][1000 genomes]
rs7119498	0.84[CEU][hapmap];0.94[CHB][hapmap];0.84[JPT][hapmap];0.84[ASN][1000 genomes]
rs763471	1.00[CEU][hapmap];0.88[CHB][hapmap];0.90[JPT][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9666586	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9971562	0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	esv19587	chr11:10433896-10434590	Weak transcription Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10415600-10436000	Weak transcription	Right Ventricle	heart
2	chr11:10427800-10435000	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr11:10427800-10435200	Weak transcription	Brain Hippocampus Middle	brain
4	chr11:10427800-10436000	Weak transcription	HSMMtube	muscle
5	chr11:10428200-10435200	Weak transcription	Dnd41	blood
6	chr11:10429000-10436000	Enhancers	Placenta	Placenta
7	chr11:10429800-10435400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr11:10429800-10435400	Weak transcription	Left Ventricle	heart
9	chr11:10429800-10436200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr11:10430000-10435200	Weak transcription	NHDF-Ad	bronchial
11	chr11:10430000-10441000	Weak transcription	Right Atrium	heart
12	chr11:10431200-10434800	Weak transcription	Adipose Nuclei	Adipose
13	chr11:10431200-10435400	Weak transcription	HUVEC	blood vessel
14	chr11:10431200-10435600	Weak transcription	Fetal Muscle Trunk	muscle
15	chr11:10431200-10435600	Weak transcription	Spleen	Spleen
16	chr11:10431200-10436000	Weak transcription	Colon Smooth Muscle	Colon
17	chr11:10431200-10436200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr11:10431400-10435000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr11:10431400-10435000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr11:10431400-10435200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr11:10431400-10435200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr11:10431400-10435400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr11:10431400-10435800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr11:10431600-10434600	Weak transcription	Primary monocytes fromperipheralblood	blood
25	chr11:10431600-10434600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
26	chr11:10431600-10434800	Weak transcription	Monocytes-CD14+_RO01746	blood
27	chr11:10431600-10435000	Weak transcription	Primary B cells from cord blood	blood
28	chr11:10431600-10435000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr11:10431600-10435000	Weak transcription	Fetal Thymus	thymus
30	chr11:10431600-10435400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr11:10431800-10434600	Weak transcription	Primary T helper cells fromperipheralblood	blood
32	chr11:10431800-10435000	Weak transcription	Primary T cells from cord blood	blood
33	chr11:10431800-10435000	Weak transcription	Primary T helper cells PMA-I stimulated	--
34	chr11:10431800-10435200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
35	chr11:10431800-10435200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr11:10432000-10435400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
37	chr11:10432200-10434200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
38	chr11:10432400-10434400	Weak transcription	Primary hematopoietic stem cells	blood
39	chr11:10432400-10434600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr11:10432600-10434800	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr11:10432800-10434600	Weak transcription	Primary neutrophils fromperipheralblood	blood
42	chr11:10432800-10434600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr11:10432800-10435000	Weak transcription	K562	blood
44	chr11:10432800-10435400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr11:10432800-10435400	Weak transcription	Skeletal Muscle Female	skeletal muscle
46	chr11:10432800-10438000	Weak transcription	Psoas Muscle	Psoas
47	chr11:10433200-10434200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr11:10433600-10435400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr11:10433800-10434200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr11:10433800-10434400	Enhancers	NHEK	skin

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