Variant report

Variant	rs10771203
Chromosome Location	chr12:25500827-25500828
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs16928698	1.00[AMR][1000 genomes]
rs2130406	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2340380	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4533127	1.00[AMR][1000 genomes]
rs4963874	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6487477	0.95[AFR][1000 genomes]
rs6487478	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7299174	1.00[AMR][1000 genomes]
rs7301624	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7350551	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv976719	chr12:25482467-25552186	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv898929	chr12:25499342-25634138	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:25499800-25502200	Enhancers	Thymus	Thymus
2	chr12:25500200-25501400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr12:25500400-25501000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr12:25500400-25501000	Enhancers	NHEK	skin
5	chr12:25500400-25501400	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr12:25500400-25501400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr12:25500600-25501000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr12:25500600-25501000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr12:25500600-25501000	Enhancers	HMEC	breast
10	chr12:25500600-25501200	Enhancers	Placenta Amnion	Placenta Amnion
11	chr12:25500600-25501200	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr12:25500600-25501200	Flanking Active TSS	Hela-S3	cervix
13	chr12:25500600-25501800	Enhancers	Fetal Thymus	thymus
14	chr12:25500800-25501000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr12:25500800-25502000	Enhancers	Placenta	Placenta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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