Variant report

Variant	rs7350551
Chromosome Location	chr12:25488594-25488595
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10771203	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16928698	1.00[AMR][1000 genomes]
rs2130406	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2340380	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4533127	1.00[AMR][1000 genomes]
rs4963874	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6487477	0.90[AFR][1000 genomes]
rs6487478	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7299174	1.00[AMR][1000 genomes]
rs7301624	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898928	chr12:25458354-25499342	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv976719	chr12:25482467-25552186	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:25487000-25491200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr12:25487400-25488600	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr12:25487400-25488800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links