Variant report

Variant	rs4963874
Chromosome Location	chr12:25507454-25507455
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10771203	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16928698	1.00[AMR][1000 genomes]
rs2130406	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2340380	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4533127	1.00[AMR][1000 genomes]
rs6487477	0.93[AFR][1000 genomes]
rs6487478	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7299174	1.00[AMR][1000 genomes]
rs7301624	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7350551	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv976719	chr12:25482467-25552186	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv898929	chr12:25499342-25634138	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:25501400-25510800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr12:25505400-25510800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr12:25505600-25518200	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr12:25507400-25508000	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr12:25507400-25508000	Enhancers	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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