Variant report

Variant	rs10771204
Chromosome Location	chr12:9068472-9068473
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MXI1	chr12:9067311-9068486	SK-N-SH	brain:	n/a	n/a
2	POLR2A	chr12:9068287-9068932	H1-hESC	embryonic stem cell:	n/a	n/a
3	SIN3A	chr12:9064234-9069882	H1-hESC	embryonic stem cell:	n/a	chr12:9066956-9066965 chr12:9068258-9068267
4	CHD1	chr12:9067416-9069628	H1-hESC	embryonic stem cell:	n/a	n/a
5	TAF7	chr12:9067311-9069050	H1-hESC	embryonic stem cell:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:9067058..9069439-chr12:9084458..9085959,2	MCF-7	breast:
2	chr12:9066826..9070397-chr12:9099293..9102558,3	K562	blood:

Variant related genes	Relation type
PHC1	TF binding region
ENSG00000111752	Chromatin interaction
ENSG00000003056	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10743564	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10771216	0.88[ASN][1000 genomes]
rs11047996	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1805740	0.85[JPT][hapmap]
rs1805741	0.85[JPT][hapmap]
rs1805762	1.00[CEU][hapmap];0.84[JPT][hapmap];0.91[EUR][1000 genomes]
rs1805778	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2477	1.00[GIH][hapmap]
rs3809218	0.86[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs4882966	0.97[ASN][1000 genomes]
rs4882967	0.88[ASN][1000 genomes]
rs4882968	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4882969	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4882970	1.00[GIH][hapmap];0.93[TSI][hapmap];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4883197	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.93[TSI][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4883198	0.93[CHB][hapmap];0.89[JPT][hapmap];0.88[ASN][1000 genomes]
rs4883199	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4883200	0.88[ASN][1000 genomes]
rs7304121	1.00[CEU][hapmap]
rs7309772	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7312166	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7312676	0.96[ASN][1000 genomes]
rs887782	0.83[LWK][hapmap];0.86[YRI][hapmap];0.80[AFR][1000 genomes]

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:9063800-9069600	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr12:9064600-9070200	Active TSS	H1 Cell Line	embryonic stem cell
3	chr12:9064800-9069400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
4	chr12:9064800-9069600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
5	chr12:9065200-9070200	Active TSS	H9 Cell Line	embryonic stem cell
6	chr12:9065200-9070200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr12:9065600-9069400	Active TSS	iPS-15b Cell Line	embryonic stem cell
8	chr12:9065600-9069800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr12:9066000-9068600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr12:9066000-9068800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr12:9066000-9069000	Active TSS	Right Atrium	heart
12	chr12:9066000-9069600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr12:9066200-9068600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr12:9066200-9069400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr12:9066200-9069400	Active TSS	HUES48 Cell Line	embryonic stem cell
16	chr12:9066200-9069600	Active TSS	iPS-18 Cell Line	embryonic stem cell
17	chr12:9066400-9068600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr12:9066400-9069000	Active TSS	HUES64 Cell Line	embryonic stem cell
19	chr12:9066600-9068600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr12:9066600-9068600	Active TSS	Pancreatic Islets	Pancreatic Islet
21	chr12:9066600-9069400	Active TSS	HUES6 Cell Line	embryonic stem cell
22	chr12:9066800-9068800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr12:9067600-9068600	Flanking Active TSS	Primary T cells from cord blood	blood
24	chr12:9067600-9068600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr12:9067600-9068800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
26	chr12:9067600-9069000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr12:9067600-9069000	Flanking Active TSS	Dnd41	blood
28	chr12:9067800-9068600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr12:9067800-9068600	Flanking Active TSS	Brain Anterior Caudate	brain
30	chr12:9067800-9068600	Flanking Active TSS	Brain Hippocampus Middle	brain
31	chr12:9067800-9068800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
32	chr12:9067800-9068800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr12:9067800-9068800	Flanking Active TSS	Brain Angular Gyrus	brain
34	chr12:9067800-9068800	Flanking Active TSS	Brain Cingulate Gyrus	brain
35	chr12:9068000-9068600	Enhancers	Primary B cells from peripheral blood	blood
36	chr12:9068000-9068600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
37	chr12:9068000-9068600	Flanking Active TSS	Brain Germinal Matrix	brain
38	chr12:9068000-9068800	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
39	chr12:9068000-9068800	Flanking Active TSS	Fetal Heart	heart
40	chr12:9068000-9068800	Flanking Active TSS	Fetal Lung	lung
41	chr12:9068000-9069000	Flanking Active TSS	Fetal Brain Female	brain
42	chr12:9068200-9068600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr12:9068200-9068600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr12:9068200-9068600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
45	chr12:9068200-9068600	Enhancers	Fetal Stomach	stomach
46	chr12:9068200-9068600	Enhancers	HSMM	muscle
47	chr12:9068200-9068600	Active TSS	NHLF	lung
48	chr12:9068200-9068800	Enhancers	Colon Smooth Muscle	Colon
49	chr12:9068200-9068800	Enhancers	Duodenum Mucosa	Duodenum
50	chr12:9068200-9068800	Active TSS	Fetal Kidney	kidney

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