Variant report

Variant	rs4883197
Chromosome Location	chr12:9069204-9069205
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr12:9068881-9069398	MCF10A-Er-Src	breast:	n/a	n/a
2	SIN3A	chr12:9064234-9069882	H1-hESC	embryonic stem cell:	n/a	chr12:9066956-9066965 chr12:9068258-9068267
3	CHD1	chr12:9067416-9069628	H1-hESC	embryonic stem cell:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:9067058..9069439-chr12:9084458..9085959,2	MCF-7	breast:
2	chr12:9066826..9070397-chr12:9099293..9102558,3	K562	blood:

Variant related genes	Relation type
PHC1	TF binding region
ENSG00000003056	Chromatin interaction
ENSG00000111752	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10129061	0.83[YRI][hapmap]
rs10743564	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10771204	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.93[TSI][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10771216	0.88[ASN][1000 genomes]
rs11047996	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1805735	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs1805740	0.85[JPT][hapmap]
rs1805741	0.85[JPT][hapmap]
rs1805762	1.00[CEU][hapmap];0.84[JPT][hapmap];0.95[EUR][1000 genomes]
rs1805778	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2477	1.00[GIH][hapmap]
rs3809218	0.86[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs4882966	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4882967	0.88[ASN][1000 genomes]
rs4882968	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4882969	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4882970	1.00[GIH][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4883198	0.93[CHB][hapmap];0.89[JPT][hapmap];0.88[ASN][1000 genomes]
rs4883199	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.84[MEX][hapmap];0.93[TSI][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4883200	0.88[ASN][1000 genomes]
rs7304121	1.00[CEU][hapmap]
rs7309772	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7312166	0.91[ASN][1000 genomes]
rs7312676	0.96[ASN][1000 genomes]

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:9063800-9069600	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr12:9064600-9070200	Active TSS	H1 Cell Line	embryonic stem cell
3	chr12:9064800-9069400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
4	chr12:9064800-9069600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
5	chr12:9065200-9070200	Active TSS	H9 Cell Line	embryonic stem cell
6	chr12:9065200-9070200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr12:9065600-9069400	Active TSS	iPS-15b Cell Line	embryonic stem cell
8	chr12:9065600-9069800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr12:9066000-9069600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr12:9066200-9069400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr12:9066200-9069400	Active TSS	HUES48 Cell Line	embryonic stem cell
12	chr12:9066200-9069600	Active TSS	iPS-18 Cell Line	embryonic stem cell
13	chr12:9066600-9069400	Active TSS	HUES6 Cell Line	embryonic stem cell
14	chr12:9068200-9069400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr12:9068200-9069400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
16	chr12:9068200-9069800	Enhancers	Primary T helper naive cells from peripheral blood	blood
17	chr12:9068200-9069800	Enhancers	Primary T killer memory cells from peripheral blood	blood
18	chr12:9068200-9069800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
19	chr12:9068200-9070000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
20	chr12:9068200-9070000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
21	chr12:9068200-9070400	Weak transcription	Fetal Muscle Trunk	muscle
22	chr12:9068200-9070400	Enhancers	K562	blood
23	chr12:9068200-9070800	Transcr. at gene 5' and 3'	iPS-20b Cell Line	embryonic stem cell
24	chr12:9068200-9071000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr12:9068200-9071000	Weak transcription	Primary hematopoietic stem cells	blood
26	chr12:9068200-9071200	Weak transcription	Fetal Intestine Large	intestine
27	chr12:9068200-9072000	Weak transcription	Left Ventricle	heart
28	chr12:9068200-9072200	Weak transcription	Fetal Intestine Small	intestine
29	chr12:9068200-9072400	Weak transcription	Aorta	Aorta
30	chr12:9068200-9072400	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr12:9068200-9074000	Weak transcription	Liver	Liver
32	chr12:9068200-9074000	Weak transcription	Spleen	Spleen
33	chr12:9068200-9074800	Weak transcription	Placenta Amnion	Placenta Amnion
34	chr12:9068200-9075000	Weak transcription	Pancreas	Pancrea
35	chr12:9068200-9079000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr12:9068200-9084000	Weak transcription	Esophagus	oesophagus
37	chr12:9068200-9086400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr12:9068200-9088800	Weak transcription	Gastric	stomach
39	chr12:9068200-9091400	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr12:9068200-9094200	Weak transcription	Colonic Mucosa	Colon
41	chr12:9068200-9094200	Weak transcription	Lung	lung
42	chr12:9068200-9094200	Weak transcription	Psoas Muscle	Psoas
43	chr12:9068200-9094200	Weak transcription	Sigmoid Colon	Sigmoid Colon
44	chr12:9068200-9094200	Weak transcription	Small Intestine	intestine
45	chr12:9068200-9100000	Weak transcription	Stomach Mucosa	stomach
46	chr12:9068400-9069400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr12:9068400-9069800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
48	chr12:9068400-9069800	Enhancers	Primary T helper cells fromperipheralblood	blood
49	chr12:9068400-9069800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
50	chr12:9068400-9069800	Enhancers	Thymus	Thymus

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