Variant report

Variant	rs7309772
Chromosome Location	chr12:9078928-9078929
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr12:9078376-9079762	H1-hESC	embryonic stem cell:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:9071947..9074171-chr12:9077435..9080273,2	K562	blood:

Variant related genes	Relation type
PHC1	TF binding region

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10129061	0.80[AFR][1000 genomes]
rs10743564	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10771204	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10771216	0.91[ASN][1000 genomes]
rs11047996	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1805735	0.85[AFR][1000 genomes]
rs1805762	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1805778	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3809218	0.86[ASN][1000 genomes]
rs4639983	0.80[AFR][1000 genomes]
rs4882966	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4882967	0.87[ASN][1000 genomes]
rs4882968	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4882969	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4882970	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4883197	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4883198	0.91[ASN][1000 genomes]
rs4883199	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4883200	0.91[ASN][1000 genomes]
rs7312166	0.94[ASN][1000 genomes]
rs7312676	0.93[ASN][1000 genomes]

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:9068200-9079000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr12:9068200-9084000	Weak transcription	Esophagus	oesophagus
3	chr12:9068200-9086400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr12:9068200-9088800	Weak transcription	Gastric	stomach
5	chr12:9068200-9091400	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr12:9068200-9094200	Weak transcription	Colonic Mucosa	Colon
7	chr12:9068200-9094200	Weak transcription	Lung	lung
8	chr12:9068200-9094200	Weak transcription	Psoas Muscle	Psoas
9	chr12:9068200-9094200	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr12:9068200-9094200	Weak transcription	Small Intestine	intestine
11	chr12:9068200-9100000	Weak transcription	Stomach Mucosa	stomach
12	chr12:9068600-9081200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr12:9068800-9081200	Weak transcription	NHDF-Ad	bronchial
14	chr12:9068800-9081600	Weak transcription	Duodenum Mucosa	Duodenum
15	chr12:9068800-9084400	Weak transcription	Osteobl	bone
16	chr12:9068800-9086400	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr12:9069000-9079600	Weak transcription	Fetal Brain Male	brain
18	chr12:9069000-9086400	Weak transcription	HepG2	liver
19	chr12:9069000-9094200	Weak transcription	NHLF	lung
20	chr12:9069400-9094000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr12:9069400-9094200	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr12:9069600-9084400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
23	chr12:9069600-9092000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr12:9069800-9082400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr12:9069800-9083600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr12:9069800-9083800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
27	chr12:9070400-9079000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr12:9070400-9079600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr12:9070400-9083400	Weak transcription	K562	blood
30	chr12:9070400-9092000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr12:9070400-9092000	Strong transcription	Fetal Muscle Trunk	muscle
32	chr12:9070600-9092000	Strong transcription	Stomach Smooth Muscle	stomach
33	chr12:9070600-9092600	Strong transcription	HUES6 Cell Line	embryonic stem cell
34	chr12:9070600-9092600	Strong transcription	iPS-15b Cell Line	embryonic stem cell
35	chr12:9071000-9079000	Strong transcription	Primary B cells from peripheral blood	blood
36	chr12:9071000-9087800	Strong transcription	Fetal Brain Female	brain
37	chr12:9071000-9092000	Strong transcription	Fetal Muscle Leg	muscle
38	chr12:9071200-9080400	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr12:9071200-9088000	Strong transcription	Primary T cells from cord blood	blood
40	chr12:9071400-9084400	Strong transcription	Brain Germinal Matrix	brain
41	chr12:9071400-9099400	Strong transcription	HUES48 Cell Line	embryonic stem cell
42	chr12:9071600-9092000	Strong transcription	H9 Cell Line	embryonic stem cell
43	chr12:9071600-9092000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
44	chr12:9071600-9100000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
45	chr12:9072200-9080200	Strong transcription	Ovary	ovary
46	chr12:9072400-9092000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
47	chr12:9072400-9094200	Weak transcription	NHEK	skin
48	chr12:9072800-9082200	Weak transcription	Aorta	Aorta
49	chr12:9072800-9091000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr12:9072800-9094200	Weak transcription	HSMM	muscle

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