Variant report

Variant	rs10771257
Chromosome Location	chr12:26229279-26229280
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10743572	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs1513129	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1567749	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2669562	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4963647	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4963951	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7306654	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7971589	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv976037	chr12:26228360-26244803	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:26201200-26234600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr12:26201600-26236200	Weak transcription	Right Ventricle	heart
3	chr12:26206800-26229600	Weak transcription	Ovary	ovary
4	chr12:26206800-26229800	Weak transcription	Stomach Smooth Muscle	stomach
5	chr12:26208400-26234600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr12:26209600-26230400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr12:26211600-26234600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr12:26211800-26230800	Weak transcription	Fetal Lung	lung
9	chr12:26215200-26230200	Weak transcription	Adipose Nuclei	Adipose
10	chr12:26215800-26230800	Weak transcription	A549	lung
11	chr12:26216000-26230400	Weak transcription	Psoas Muscle	Psoas
12	chr12:26216000-26230600	Weak transcription	HMEC	breast
13	chr12:26216000-26230800	Weak transcription	NHLF	lung
14	chr12:26216000-26231000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr12:26216200-26230800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr12:26216200-26231000	Weak transcription	NH-A	brain
17	chr12:26221800-26230800	Weak transcription	Fetal Stomach	stomach
18	chr12:26221800-26234000	Weak transcription	Fetal Intestine Small	intestine
19	chr12:26222000-26230800	Weak transcription	NHEK	skin
20	chr12:26222000-26234600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr12:26222400-26230200	Weak transcription	HUVEC	blood vessel
22	chr12:26222400-26230400	Weak transcription	Left Ventricle	heart
23	chr12:26222400-26234000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr12:26222800-26245800	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr12:26223200-26230800	Weak transcription	Osteobl	bone
26	chr12:26223400-26230600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr12:26224000-26230800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr12:26224000-26234000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr12:26226200-26230800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr12:26228000-26231000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr12:26228400-26230400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr12:26228800-26230600	Weak transcription	NHDF-Ad	bronchial
33	chr12:26229000-26229400	Weak transcription	HSMM	muscle
34	chr12:26229000-26233600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr12:26229000-26234000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
36	chr12:26229000-26234600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr12:26229000-26235000	Weak transcription	Aorta	Aorta
38	chr12:26229200-26230600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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