Variant report

Variant	rs1513129
Chromosome Location	chr12:26225014-26225015
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SSPN-5	chr12:26224196-26225483	ucscGeneNc_uc001rhc_2

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10771257	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1513130	0.87[YRI][hapmap]
rs1567749	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1691889	0.82[CEU][hapmap]
rs2669562	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2669565	0.87[LWK][hapmap];1.00[YRI][hapmap]
rs2729626	0.85[MKK][hapmap]
rs4963647	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4963951	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs706538	0.82[CEU][hapmap]
rs7133685	0.87[YRI][hapmap]
rs7306654	1.00[ASN][1000 genomes]
rs7961722	1.00[YRI][hapmap]
rs7971589	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:26192400-26228600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr12:26197200-26228600	Weak transcription	Aorta	Aorta
3	chr12:26200800-26229000	Weak transcription	Fetal Muscle Trunk	muscle
4	chr12:26201200-26234600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr12:26201600-26236200	Weak transcription	Right Ventricle	heart
6	chr12:26206800-26229600	Weak transcription	Ovary	ovary
7	chr12:26206800-26229800	Weak transcription	Stomach Smooth Muscle	stomach
8	chr12:26208400-26234600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr12:26209600-26230400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr12:26211400-26227400	Weak transcription	Placenta	Placenta
11	chr12:26211600-26234600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr12:26211800-26230800	Weak transcription	Fetal Lung	lung
13	chr12:26215200-26230200	Weak transcription	Adipose Nuclei	Adipose
14	chr12:26215800-26230800	Weak transcription	A549	lung
15	chr12:26216000-26226800	Weak transcription	Hela-S3	cervix
16	chr12:26216000-26227600	Weak transcription	HSMMtube	muscle
17	chr12:26216000-26228800	Weak transcription	HSMM	muscle
18	chr12:26216000-26229200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr12:26216000-26230400	Weak transcription	Psoas Muscle	Psoas
20	chr12:26216000-26230600	Weak transcription	HMEC	breast
21	chr12:26216000-26230800	Weak transcription	NHLF	lung
22	chr12:26216000-26231000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr12:26216200-26230800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr12:26216200-26231000	Weak transcription	NH-A	brain
25	chr12:26217000-26226200	Strong transcription	NHDF-Ad	bronchial
26	chr12:26220600-26227600	Weak transcription	Fetal Kidney	kidney
27	chr12:26221800-26226200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr12:26221800-26230800	Weak transcription	Fetal Stomach	stomach
29	chr12:26221800-26234000	Weak transcription	Fetal Intestine Small	intestine
30	chr12:26222000-26228000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr12:26222000-26230800	Weak transcription	NHEK	skin
32	chr12:26222000-26234600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr12:26222200-26227600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr12:26222200-26227800	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr12:26222400-26230200	Weak transcription	HUVEC	blood vessel
36	chr12:26222400-26230400	Weak transcription	Left Ventricle	heart
37	chr12:26222400-26234000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr12:26222600-26226400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
39	chr12:26222600-26227600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr12:26222800-26227400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr12:26222800-26245800	Weak transcription	Muscle Satellite Cultured Cells	--
42	chr12:26223200-26230800	Weak transcription	Osteobl	bone
43	chr12:26223400-26228000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr12:26223400-26230600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr12:26224000-26228400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
46	chr12:26224000-26230800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr12:26224000-26234000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr12:26224400-26225200	Enhancers	Cortex derived primary cultured neurospheres	brain
49	chr12:26224800-26225200	Enhancers	Brain Angular Gyrus	brain
50	chr12:26224800-26225200	Enhancers	Brain Hippocampus Middle	brain

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