Variant report

Variant	rs4963647
Chromosome Location	chr12:26243826-26243827
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:26240929..26244393-chr12:26265760..26268742,3	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10743572	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10771257	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1513129	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];0.87[LWK][hapmap];1.00[MKK][hapmap];0.87[TSI][hapmap];0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1567749	1.00[ASN][1000 genomes]
rs1691889	0.82[CEU][hapmap]
rs2669562	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];0.87[LWK][hapmap];1.00[MKK][hapmap];0.87[TSI][hapmap];1.00[ASN][1000 genomes]
rs2729626	0.85[MKK][hapmap];0.89[YRI][hapmap]
rs4963951	1.00[ASN][1000 genomes]
rs706538	0.82[CEU][hapmap]
rs7306654	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7971589	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv976037	chr12:26228360-26244803	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases
2	esv3388130	chr12:26243678-26244035	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:26222800-26245800	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr12:26231200-26244200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr12:26231400-26244000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr12:26235400-26246000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr12:26242200-26245000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr12:26242200-26245000	Enhancers	Placenta	Placenta
7	chr12:26242400-26247200	Weak transcription	Fetal Intestine Small	intestine
8	chr12:26242400-26247800	Weak transcription	Fetal Intestine Large	intestine
9	chr12:26243600-26245000	Enhancers	Placenta Amnion	Placenta Amnion
10	chr12:26243600-26245200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr12:26243800-26244200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr12:26243800-26244400	Enhancers	H9 Cell Line	embryonic stem cell
13	chr12:26243800-26244400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr12:26243800-26244400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr12:26243800-26244400	Enhancers	NHDF-Ad	bronchial
16	chr12:26243800-26244600	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr12:26243800-26244600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr12:26243800-26244800	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr12:26243800-26245000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr12:26243800-26245000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr12:26243800-26245000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr12:26243800-26245200	Enhancers	NHEK	skin
23	chr12:26243800-26245800	Enhancers	HMEC	breast
24	chr12:26243800-26246400	Enhancers	Fetal Lung	lung

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