Variant report

Variant	rs7961722
Chromosome Location	chr12:26224033-26224034
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10505989	0.80[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs10732540	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10842669	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12368460	0.84[ASN][1000 genomes]
rs12369397	0.84[ASN][1000 genomes]
rs12426668	0.81[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1495649	0.90[JPT][hapmap]
rs1513129	1.00[YRI][hapmap]
rs1513130	0.87[YRI][hapmap]
rs1546550	0.95[CEU][hapmap];0.95[EUR][1000 genomes]
rs16929780	0.92[JPT][hapmap]
rs16929815	0.92[JPT][hapmap]
rs16929860	0.92[JPT][hapmap]
rs16929894	0.92[JPT][hapmap]
rs16929895	0.92[JPT][hapmap]
rs16929904	0.91[JPT][hapmap]
rs16929970	0.80[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs16929998	0.86[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs16930076	0.84[ASN][1000 genomes]
rs2048609	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2137550	0.88[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2271480	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs2343200	0.92[JPT][hapmap]
rs2620705	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2643943	0.86[ASN][1000 genomes]
rs2669562	1.00[YRI][hapmap]
rs2669563	0.87[EUR][1000 genomes]
rs2669564	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2669565	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2669566	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2669567	0.82[EUR][1000 genomes]
rs2669568	0.92[JPT][hapmap]
rs2729626	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2729638	0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs2729643	0.92[JPT][hapmap]
rs2729644	0.92[JPT][hapmap]
rs2729649	0.92[JPT][hapmap]
rs4963644	0.92[JPT][hapmap]
rs4963947	0.92[JPT][hapmap]
rs4963952	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4963953	0.84[ASN][1000 genomes]
rs61123975	0.94[ASN][1000 genomes]
rs6487526	0.80[CHB][hapmap];0.92[JPT][hapmap];0.86[ASN][1000 genomes]
rs7132288	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7133685	0.88[YRI][hapmap]
rs7306344	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73080925	0.91[ASN][1000 genomes]
rs73080984	0.84[ASN][1000 genomes]
rs9804762	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv973038	chr12:26221928-26224398	Strong transcription Weak transcription Enhancers Genic enhancers	lncRNA miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:26192400-26228600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr12:26197200-26228600	Weak transcription	Aorta	Aorta
3	chr12:26200800-26229000	Weak transcription	Fetal Muscle Trunk	muscle
4	chr12:26201200-26234600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr12:26201600-26236200	Weak transcription	Right Ventricle	heart
6	chr12:26206800-26229600	Weak transcription	Ovary	ovary
7	chr12:26206800-26229800	Weak transcription	Stomach Smooth Muscle	stomach
8	chr12:26208400-26234600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr12:26209600-26224800	Weak transcription	Brain Anterior Caudate	brain
10	chr12:26209600-26230400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr12:26211400-26227400	Weak transcription	Placenta	Placenta
12	chr12:26211600-26234600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr12:26211800-26230800	Weak transcription	Fetal Lung	lung
14	chr12:26214400-26224800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr12:26215200-26230200	Weak transcription	Adipose Nuclei	Adipose
16	chr12:26215800-26230800	Weak transcription	A549	lung
17	chr12:26216000-26226800	Weak transcription	Hela-S3	cervix
18	chr12:26216000-26227600	Weak transcription	HSMMtube	muscle
19	chr12:26216000-26228800	Weak transcription	HSMM	muscle
20	chr12:26216000-26229200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr12:26216000-26230400	Weak transcription	Psoas Muscle	Psoas
22	chr12:26216000-26230600	Weak transcription	HMEC	breast
23	chr12:26216000-26230800	Weak transcription	NHLF	lung
24	chr12:26216000-26231000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr12:26216200-26230800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr12:26216200-26231000	Weak transcription	NH-A	brain
27	chr12:26217000-26226200	Strong transcription	NHDF-Ad	bronchial
28	chr12:26220600-26227600	Weak transcription	Fetal Kidney	kidney
29	chr12:26220800-26225000	Weak transcription	Brain Substantia Nigra	brain
30	chr12:26221800-26224400	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr12:26221800-26226200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr12:26221800-26230800	Weak transcription	Fetal Stomach	stomach
33	chr12:26221800-26234000	Weak transcription	Fetal Intestine Small	intestine
34	chr12:26222000-26224800	Weak transcription	Brain Hippocampus Middle	brain
35	chr12:26222000-26228000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr12:26222000-26230800	Weak transcription	NHEK	skin
37	chr12:26222000-26234600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr12:26222200-26224800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr12:26222200-26224800	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr12:26222200-26227600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr12:26222200-26227800	Weak transcription	HUES64 Cell Line	embryonic stem cell
42	chr12:26222400-26224800	Weak transcription	Brain Angular Gyrus	brain
43	chr12:26222400-26230200	Weak transcription	HUVEC	blood vessel
44	chr12:26222400-26230400	Weak transcription	Left Ventricle	heart
45	chr12:26222400-26234000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr12:26222600-26226400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
47	chr12:26222600-26227600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr12:26222800-26227400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr12:26222800-26245800	Weak transcription	Muscle Satellite Cultured Cells	--
50	chr12:26223200-26230800	Weak transcription	Osteobl	bone

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