Variant report

Variant	rs16929970
Chromosome Location	chr12:26207091-26207092
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10505989	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10842654	0.88[CEU][hapmap]
rs10842669	0.85[ASN][1000 genomes]
rs12368460	0.81[ASN][1000 genomes]
rs12369397	0.81[ASN][1000 genomes]
rs12425863	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12426668	0.88[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1495649	0.81[CHB][hapmap];0.90[JPT][hapmap];0.81[AMR][1000 genomes]
rs1533244	0.81[AMR][1000 genomes]
rs16929780	0.92[JPT][hapmap];0.81[AMR][1000 genomes]
rs16929815	0.86[CHB][hapmap];0.92[JPT][hapmap];0.81[AMR][1000 genomes]
rs16929860	0.88[CEU][hapmap];0.86[CHB][hapmap];0.92[JPT][hapmap];0.81[AMR][1000 genomes]
rs16929894	0.88[CEU][hapmap];0.88[CHB][hapmap];0.92[JPT][hapmap];0.83[AMR][1000 genomes]
rs16929895	0.88[CEU][hapmap];0.88[CHB][hapmap];0.92[JPT][hapmap];0.83[AMR][1000 genomes]
rs16929904	0.91[JPT][hapmap];0.83[AMR][1000 genomes]
rs16929998	0.88[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16930076	0.81[ASN][1000 genomes]
rs2048609	0.87[ASN][1000 genomes]
rs2137550	0.88[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs2343200	0.87[CHB][hapmap];0.92[JPT][hapmap]
rs2620705	0.85[ASN][1000 genomes]
rs2643943	0.91[ASN][1000 genomes]
rs2669564	0.87[ASN][1000 genomes]
rs2669565	0.93[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2669566	0.93[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2669568	0.92[JPT][hapmap]
rs2729626	0.93[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2729638	0.88[CHB][hapmap];0.91[JPT][hapmap];0.91[ASN][1000 genomes]
rs2729643	0.92[JPT][hapmap]
rs2729644	0.92[JPT][hapmap]
rs2729649	0.92[JPT][hapmap]
rs4963644	0.92[JPT][hapmap];0.81[AMR][1000 genomes]
rs4963947	0.92[JPT][hapmap];0.81[AMR][1000 genomes]
rs4963952	0.93[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4963953	0.81[ASN][1000 genomes]
rs61123975	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6487526	0.87[CHB][hapmap];0.92[JPT][hapmap];0.91[ASN][1000 genomes]
rs7132288	0.85[ASN][1000 genomes]
rs7306344	0.86[ASN][1000 genomes]
rs73074898	0.81[AMR][1000 genomes]
rs73077103	0.81[AMR][1000 genomes]
rs73077131	0.81[AMR][1000 genomes]
rs73077152	0.81[AMR][1000 genomes]
rs73079010	0.83[AMR][1000 genomes]
rs73079023	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73079024	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73079069	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73080925	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73080984	0.81[ASN][1000 genomes]
rs7961722	0.80[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs9804762	0.85[ASN][1000 genomes]
rs9804876	0.88[CEU][hapmap]

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:26192400-26228600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr12:26196200-26208200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr12:26196400-26219800	Weak transcription	Fetal Kidney	kidney
4	chr12:26197000-26208200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr12:26197200-26209400	Weak transcription	NHLF	lung
6	chr12:26197200-26211800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr12:26197200-26228600	Weak transcription	Aorta	Aorta
8	chr12:26197600-26209200	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr12:26197800-26209000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr12:26199200-26220200	Weak transcription	Brain Substantia Nigra	brain
11	chr12:26199400-26221600	Weak transcription	Brain Cingulate Gyrus	brain
12	chr12:26200600-26209200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr12:26200800-26207400	Weak transcription	Pancreas	Pancrea
14	chr12:26200800-26208800	Weak transcription	Lung	lung
15	chr12:26200800-26209200	Weak transcription	Fetal Brain Male	brain
16	chr12:26200800-26229000	Weak transcription	Fetal Muscle Trunk	muscle
17	chr12:26201000-26207400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr12:26201000-26220800	Weak transcription	Left Ventricle	heart
19	chr12:26201000-26223400	Weak transcription	Fetal Muscle Leg	muscle
20	chr12:26201200-26210800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr12:26201200-26234600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr12:26201400-26209600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr12:26201400-26221600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr12:26201600-26215400	Weak transcription	Psoas Muscle	Psoas
25	chr12:26201600-26236200	Weak transcription	Right Ventricle	heart
26	chr12:26202000-26211800	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr12:26204600-26211200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr12:26204800-26207600	Enhancers	NHDF-Ad	bronchial
29	chr12:26205200-26207800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr12:26205400-26207800	Enhancers	Colon Smooth Muscle	Colon
31	chr12:26205400-26208200	Enhancers	Osteobl	bone
32	chr12:26205400-26209800	Enhancers	HUVEC	blood vessel
33	chr12:26205400-26215400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr12:26205600-26208200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr12:26205800-26207200	Enhancers	Rectal Smooth Muscle	rectum
36	chr12:26206000-26209200	Weak transcription	NH-A	brain
37	chr12:26206000-26209400	Weak transcription	HSMM	muscle
38	chr12:26206000-26215200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr12:26206400-26207600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr12:26206400-26207800	Enhancers	HUES64 Cell Line	embryonic stem cell
41	chr12:26206600-26207200	Enhancers	Brain Hippocampus Middle	brain
42	chr12:26206600-26207400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr12:26206600-26207800	Enhancers	ES-I3 Cell Line	embryonic stem cell
44	chr12:26206600-26207800	Enhancers	HUES48 Cell Line	embryonic stem cell
45	chr12:26206600-26207800	Enhancers	HUES6 Cell Line	embryonic stem cell
46	chr12:26206600-26208000	Enhancers	iPS-18 Cell Line	embryonic stem cell
47	chr12:26206600-26208000	Enhancers	iPS-20b Cell Line	embryonic stem cell
48	chr12:26206600-26209000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr12:26206800-26207600	Enhancers	Stomach Mucosa	stomach
50	chr12:26206800-26208000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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