Variant report

Variant	rs73079024
Chromosome Location	chr12:26179800-26179801
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:26179146..26181652-chr12:26265259..26267157,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10505989	0.82[AMR][1000 genomes]
rs10842654	0.83[AMR][1000 genomes]
rs12425863	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12426668	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1495649	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1533244	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16929780	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16929815	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16929860	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16929894	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16929895	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16929904	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16929970	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs16929998	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2343200	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4963644	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4963947	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57082706	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57791860	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61123975	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73074872	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73074898	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73077103	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73077131	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73077152	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73077161	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73077176	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73077179	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73079010	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73079021	0.88[AMR][1000 genomes]
rs73079023	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73079069	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73080925	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898931	chr12:26123345-26192936	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:26167400-26180600	Weak transcription	Rectal Smooth Muscle	rectum
2	chr12:26169400-26185400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr12:26169600-26182000	Weak transcription	NHLF	lung
4	chr12:26170800-26181600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr12:26170800-26182000	Weak transcription	Pancreas	Pancrea
6	chr12:26170800-26185600	Weak transcription	Aorta	Aorta
7	chr12:26171000-26182000	Weak transcription	HUVEC	blood vessel
8	chr12:26171000-26183800	Weak transcription	Hela-S3	cervix
9	chr12:26171000-26190600	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr12:26172000-26182000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr12:26172200-26180200	Weak transcription	NH-A	brain
12	chr12:26172200-26180400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr12:26172200-26181800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr12:26172400-26180000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr12:26172600-26180000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr12:26172600-26180000	Weak transcription	NHDF-Ad	bronchial
17	chr12:26173200-26180000	Weak transcription	Osteobl	bone
18	chr12:26173400-26186800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr12:26174200-26180600	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr12:26174600-26182000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr12:26174600-26185600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr12:26174800-26181800	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr12:26174800-26182000	Weak transcription	Right Atrium	heart
24	chr12:26174800-26185600	Weak transcription	Ovary	ovary
25	chr12:26175000-26180800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr12:26175000-26181400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr12:26175000-26181800	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr12:26175000-26190600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr12:26175000-26191000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr12:26175200-26182000	Weak transcription	Brain Anterior Caudate	brain
31	chr12:26175200-26186800	Weak transcription	Psoas Muscle	Psoas
32	chr12:26175200-26190800	Weak transcription	Stomach Smooth Muscle	stomach
33	chr12:26175400-26180200	Weak transcription	Brain Hippocampus Middle	brain
34	chr12:26175400-26180400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr12:26175400-26180600	Weak transcription	Brain Cingulate Gyrus	brain
36	chr12:26175400-26180800	Weak transcription	Brain Angular Gyrus	brain
37	chr12:26175400-26180800	Weak transcription	Brain Substantia Nigra	brain
38	chr12:26175400-26181800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
39	chr12:26175400-26185800	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr12:26175400-26190000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr12:26176000-26184200	Weak transcription	Left Ventricle	heart
42	chr12:26177600-26180000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr12:26178200-26181200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr12:26179000-26180400	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr12:26179400-26179800	Weak transcription	Colon Smooth Muscle	Colon
46	chr12:26179600-26180600	Weak transcription	Small Intestine	intestine
47	chr12:26179600-26180800	Enhancers	Fetal Intestine Small	intestine
48	chr12:26179800-26186000	Enhancers	Colon Smooth Muscle	Colon

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