Variant report

Variant	rs57791860
Chromosome Location	chr12:26156921-26156922
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs12425863	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12426668	0.90[EUR][1000 genomes]
rs1495649	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1533244	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16929780	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16929815	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16929860	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16929894	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16929895	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16929904	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16929998	0.90[EUR][1000 genomes]
rs2343200	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4963643	0.85[AMR][1000 genomes]
rs4963644	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4963947	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57082706	0.84[EUR][1000 genomes]
rs73074872	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73074898	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73077103	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73077131	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73077152	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73077161	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73077176	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73077179	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73079010	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73079023	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73079024	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73079069	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9804876	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758300	chr12:25992331-26161116	Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
2	esv2759886	chr12:25992331-26161116	Enhancers Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
3	nsv898931	chr12:26123345-26192936	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:26139600-26160000	Weak transcription	Pancreas	Pancrea
2	chr12:26145600-26163000	Weak transcription	Fetal Muscle Leg	muscle
3	chr12:26146200-26163000	Weak transcription	Lung	lung
4	chr12:26148000-26163600	Weak transcription	Aorta	Aorta
5	chr12:26148200-26157000	Weak transcription	Psoas Muscle	Psoas
6	chr12:26150800-26159600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr12:26150800-26160000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr12:26150800-26163200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr12:26151000-26163000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr12:26151200-26160000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr12:26151400-26160400	Weak transcription	Rectal Smooth Muscle	rectum
12	chr12:26151400-26162000	Weak transcription	Hela-S3	cervix
13	chr12:26152200-26162800	Weak transcription	HSMM	muscle
14	chr12:26152800-26157400	Strong transcription	NHDF-Ad	bronchial
15	chr12:26154800-26157400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr12:26154800-26157800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr12:26154800-26163400	Weak transcription	HSMMtube	muscle
18	chr12:26155000-26159400	Weak transcription	Colon Smooth Muscle	Colon
19	chr12:26155800-26159800	Weak transcription	Left Ventricle	heart
20	chr12:26155800-26163200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr12:26156000-26159600	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr12:26156000-26160200	Weak transcription	Fetal Stomach	stomach
23	chr12:26156000-26162800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr12:26156200-26161800	Weak transcription	Fetal Lung	lung
25	chr12:26156200-26163000	Weak transcription	Brain Cingulate Gyrus	brain
26	chr12:26156400-26158000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr12:26156400-26158800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr12:26156400-26159800	Weak transcription	Fetal Heart	heart
29	chr12:26156400-26160000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr12:26156400-26160200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr12:26156400-26160200	Weak transcription	Fetal Intestine Large	intestine
32	chr12:26156400-26160200	Weak transcription	Stomach Smooth Muscle	stomach
33	chr12:26156400-26161600	Weak transcription	Brain Anterior Caudate	brain
34	chr12:26156400-26161800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr12:26156400-26161800	Weak transcription	Osteobl	bone
36	chr12:26156400-26162400	Weak transcription	Ovary	ovary
37	chr12:26156400-26162600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr12:26156400-26162600	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr12:26156400-26163000	Weak transcription	Cortex derived primary cultured neurospheres	brain
40	chr12:26156400-26163400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr12:26156600-26157200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr12:26156600-26157800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr12:26156600-26159800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr12:26156600-26160000	Weak transcription	HUES64 Cell Line	embryonic stem cell
45	chr12:26156600-26160200	Weak transcription	NHLF	lung
46	chr12:26156600-26160400	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr12:26156600-26162400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr12:26156600-26162800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr12:26156600-26162800	Weak transcription	NH-A	brain
50	chr12:26156600-26163600	Weak transcription	Brain Inferior Temporal Lobe	brain

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