Variant report

Variant	rs16929998
Chromosome Location	chr12:26215107-26215108
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:26212512..26214260-chr12:26214676..26217188,2	K562	blood:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10505989	0.88[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10842654	1.00[CEU][hapmap];0.93[MEX][hapmap]
rs10842669	0.81[ASN][1000 genomes]
rs12368460	0.86[ASN][1000 genomes]
rs12369397	0.86[ASN][1000 genomes]
rs12425863	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12426668	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1495649	0.85[CHB][hapmap];0.90[JPT][hapmap];0.83[AMR][1000 genomes]
rs1533244	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16929780	0.87[CEU][hapmap];0.92[JPT][hapmap];0.83[AMR][1000 genomes]
rs16929815	1.00[ASW][hapmap];0.87[CEU][hapmap];0.92[CHB][hapmap];0.92[JPT][hapmap];0.85[MEX][hapmap];0.90[TSI][hapmap];0.83[AMR][1000 genomes]
rs16929860	1.00[CEU][hapmap];0.92[CHB][hapmap];0.92[JPT][hapmap];0.85[MEX][hapmap];0.90[TSI][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16929894	1.00[CEU][hapmap];0.92[CHB][hapmap];0.92[JPT][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs16929895	1.00[CEU][hapmap];0.92[CHB][hapmap];0.92[JPT][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs16929904	0.82[CEU][hapmap];0.91[JPT][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs16929970	0.88[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16930076	0.86[ASN][1000 genomes]
rs2048609	0.83[ASN][1000 genomes]
rs2137550	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2343200	0.87[CEU][hapmap];0.92[CHB][hapmap];0.92[JPT][hapmap];0.84[EUR][1000 genomes]
rs2620705	0.81[ASN][1000 genomes]
rs2643943	0.88[ASN][1000 genomes]
rs2669564	0.83[ASN][1000 genomes]
rs2669565	0.86[CHB][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.83[ASN][1000 genomes]
rs2669566	0.86[CHB][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.83[ASN][1000 genomes]
rs2669568	0.92[JPT][hapmap]
rs2729626	0.86[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2729638	0.81[CHB][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs2729643	0.92[JPT][hapmap]
rs2729644	0.92[JPT][hapmap]
rs2729649	0.92[JPT][hapmap]
rs4963644	0.87[CEU][hapmap];0.92[JPT][hapmap];0.83[AMR][1000 genomes]
rs4963947	1.00[ASW][hapmap];0.87[CEU][hapmap];0.92[JPT][hapmap];0.93[MEX][hapmap];0.90[TSI][hapmap];0.83[AMR][1000 genomes]
rs4963952	0.86[CHB][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.82[ASN][1000 genomes]
rs4963953	0.86[ASN][1000 genomes]
rs57082706	0.88[EUR][1000 genomes]
rs57791860	0.90[EUR][1000 genomes]
rs61123975	0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6487526	0.81[CHB][hapmap];0.93[CHD][hapmap];0.92[JPT][hapmap];0.88[ASN][1000 genomes]
rs7132288	0.81[ASN][1000 genomes]
rs7306344	0.82[ASN][1000 genomes]
rs73074898	0.83[AMR][1000 genomes]
rs73077103	0.83[AMR][1000 genomes]
rs73077131	0.83[AMR][1000 genomes]
rs73077152	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73077161	0.90[EUR][1000 genomes]
rs73077176	0.90[EUR][1000 genomes]
rs73077179	0.90[EUR][1000 genomes]
rs73079010	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs73079023	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73079024	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73079069	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73080925	0.98[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73080984	0.86[ASN][1000 genomes]
rs7961722	0.86[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs9804762	0.81[ASN][1000 genomes]
rs9804876	1.00[CEU][hapmap];0.93[MEX][hapmap]

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:26192400-26228600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr12:26196400-26219800	Weak transcription	Fetal Kidney	kidney
3	chr12:26197200-26228600	Weak transcription	Aorta	Aorta
4	chr12:26199200-26220200	Weak transcription	Brain Substantia Nigra	brain
5	chr12:26199400-26221600	Weak transcription	Brain Cingulate Gyrus	brain
6	chr12:26200800-26229000	Weak transcription	Fetal Muscle Trunk	muscle
7	chr12:26201000-26220800	Weak transcription	Left Ventricle	heart
8	chr12:26201000-26223400	Weak transcription	Fetal Muscle Leg	muscle
9	chr12:26201200-26234600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr12:26201400-26221600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr12:26201600-26215400	Weak transcription	Psoas Muscle	Psoas
12	chr12:26201600-26236200	Weak transcription	Right Ventricle	heart
13	chr12:26205400-26215400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr12:26206000-26215200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr12:26206800-26229600	Weak transcription	Ovary	ovary
16	chr12:26206800-26229800	Weak transcription	Stomach Smooth Muscle	stomach
17	chr12:26207000-26218000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr12:26207000-26221400	Weak transcription	Fetal Stomach	stomach
19	chr12:26207200-26220400	Weak transcription	Brain Hippocampus Middle	brain
20	chr12:26207400-26223600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr12:26207600-26217400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr12:26207600-26221200	Weak transcription	Pancreas	Pancrea
23	chr12:26207800-26221400	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr12:26207800-26221400	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr12:26207800-26224000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr12:26207800-26224000	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr12:26208000-26221000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr12:26208400-26215600	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr12:26208400-26234600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr12:26209000-26220400	Weak transcription	Lung	lung
31	chr12:26209600-26215200	Weak transcription	HMEC	breast
32	chr12:26209600-26215400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr12:26209600-26215400	Weak transcription	NH-A	brain
34	chr12:26209600-26220200	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr12:26209600-26220600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr12:26209600-26224800	Weak transcription	Brain Anterior Caudate	brain
37	chr12:26209600-26230400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr12:26209800-26215200	Weak transcription	HSMM	muscle
39	chr12:26209800-26215200	Weak transcription	HSMMtube	muscle
40	chr12:26209800-26215400	Weak transcription	HUVEC	blood vessel
41	chr12:26209800-26220400	Weak transcription	Fetal Intestine Small	intestine
42	chr12:26211400-26227400	Weak transcription	Placenta	Placenta
43	chr12:26211600-26220200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr12:26211600-26223800	Weak transcription	Fetal Intestine Large	intestine
45	chr12:26211600-26234600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr12:26211800-26217800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr12:26211800-26230800	Weak transcription	Fetal Lung	lung
48	chr12:26212000-26216400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr12:26212000-26217800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr12:26212200-26215400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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