Variant report

Variant	rs73080984
Chromosome Location	chr12:26245347-26245348
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:26244568..26246194-chr12:26248819..26250722,2	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10505989	0.82[ASN][1000 genomes]
rs10842669	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11048409	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12368460	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12369397	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12426668	0.86[ASN][1000 genomes]
rs16929970	0.81[ASN][1000 genomes]
rs16929998	0.86[ASN][1000 genomes]
rs16930076	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2048609	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2137550	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2620705	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2669564	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2669565	0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2669566	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2729626	0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4963952	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4963953	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60836137	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61123975	0.81[ASN][1000 genomes]
rs7132288	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7306344	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7961722	0.84[ASN][1000 genomes]
rs9804762	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:26222800-26245800	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr12:26235400-26246000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr12:26242400-26247200	Weak transcription	Fetal Intestine Small	intestine
4	chr12:26242400-26247800	Weak transcription	Fetal Intestine Large	intestine
5	chr12:26243800-26245800	Enhancers	HMEC	breast
6	chr12:26243800-26246400	Enhancers	Fetal Lung	lung
7	chr12:26244400-26245400	Weak transcription	NH-A	brain
8	chr12:26244400-26246800	Weak transcription	HSMMtube	muscle
9	chr12:26244400-26250200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr12:26244400-26250400	Weak transcription	NHDF-Ad	bronchial
11	chr12:26244600-26245800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr12:26244600-26249800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr12:26244600-26254200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr12:26244800-26250200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr12:26245000-26246200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr12:26245000-26246200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr12:26245000-26248800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr12:26245000-26249800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr12:26245000-26250200	Weak transcription	Osteobl	bone
20	chr12:26245200-26246200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr12:26245200-26247000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr12:26245200-26249800	Weak transcription	NHEK	skin
23	chr12:26245200-26254000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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