Variant report

Variant	rs4963953
Chromosome Location	chr12:26233294-26233295
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10505989	0.85[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs10842654	0.92[CEU][hapmap]
rs10842669	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11048409	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12368460	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12369397	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12426668	0.92[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1495649	0.90[JPT][hapmap]
rs16929780	0.92[JPT][hapmap]
rs16929815	0.83[CHB][hapmap];0.92[JPT][hapmap]
rs16929860	0.92[CEU][hapmap];0.83[CHB][hapmap];0.92[JPT][hapmap]
rs16929894	0.92[CEU][hapmap];0.92[JPT][hapmap]
rs16929895	0.92[CEU][hapmap];0.92[JPT][hapmap]
rs16929904	0.91[JPT][hapmap]
rs16929970	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs16929998	0.92[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs16930076	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2048609	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2137550	0.92[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2343200	0.92[JPT][hapmap]
rs2620705	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2669564	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2669565	1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2669566	1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2669568	0.92[JPT][hapmap]
rs2729626	1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2729638	0.91[JPT][hapmap]
rs2729643	0.92[JPT][hapmap]
rs2729644	0.92[JPT][hapmap]
rs2729649	0.92[JPT][hapmap]
rs4963644	0.92[JPT][hapmap]
rs4963947	0.92[JPT][hapmap]
rs4963952	1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs60836137	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61123975	0.81[ASN][1000 genomes]
rs6487526	0.92[JPT][hapmap]
rs7132288	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7306344	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs73080984	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7961722	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs9804762	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9804876	0.92[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv976037	chr12:26228360-26244803	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:26201200-26234600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr12:26201600-26236200	Weak transcription	Right Ventricle	heart
3	chr12:26208400-26234600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr12:26211600-26234600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr12:26221800-26234000	Weak transcription	Fetal Intestine Small	intestine
6	chr12:26222000-26234600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr12:26222400-26234000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr12:26222800-26245800	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr12:26224000-26234000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr12:26229000-26233600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr12:26229000-26234000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr12:26229000-26234600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr12:26229000-26235000	Weak transcription	Aorta	Aorta
14	chr12:26231200-26244200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr12:26231400-26243800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr12:26231400-26243800	Weak transcription	NHDF-Ad	bronchial
17	chr12:26231400-26244000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr12:26231600-26243600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr12:26232600-26234800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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