Variant report

Variant	rs16929895
Chromosome Location	chr12:26167433-26167434
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10505989	0.88[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap];0.83[AMR][1000 genomes]
rs10842654	1.00[CEU][hapmap];0.85[AMR][1000 genomes]
rs12425863	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12426668	1.00[CEU][hapmap];0.93[CHB][hapmap];0.92[JPT][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1495649	0.93[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1533244	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16929780	0.88[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16929815	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16929860	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16929894	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16929904	0.83[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16929970	0.88[CEU][hapmap];0.88[CHB][hapmap];0.92[JPT][hapmap];0.83[AMR][1000 genomes]
rs16929998	1.00[CEU][hapmap];0.92[CHB][hapmap];0.92[JPT][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2137550	0.86[CHB][hapmap];0.92[JPT][hapmap]
rs2343200	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2669565	0.92[JPT][hapmap]
rs2669566	0.92[JPT][hapmap]
rs2669568	0.83[JPT][hapmap]
rs2729626	0.92[JPT][hapmap]
rs2729638	0.82[JPT][hapmap]
rs2729643	0.86[CHB][hapmap];0.83[JPT][hapmap]
rs2729644	0.88[CHB][hapmap];0.84[JPT][hapmap]
rs2729649	0.88[CHB][hapmap];0.84[JPT][hapmap]
rs4963643	0.82[AMR][1000 genomes]
rs4963644	0.88[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4963947	0.87[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4963952	0.92[JPT][hapmap]
rs57082706	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs57791860	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61123975	0.83[AMR][1000 genomes]
rs6487526	0.83[JPT][hapmap]
rs73074872	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73074898	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73077103	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73077131	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73077152	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73077161	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73077176	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73077179	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73079010	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73079021	0.86[AMR][1000 genomes]
rs73079023	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73079024	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73079069	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73080925	0.83[AMR][1000 genomes]
rs7961722	0.92[JPT][hapmap]
rs9804876	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898931	chr12:26123345-26192936	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:26160600-26168000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr12:26160600-26168200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr12:26160600-26168200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr12:26160600-26168200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr12:26160600-26170400	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr12:26160600-26170600	Weak transcription	Fetal Intestine Small	intestine
7	chr12:26160600-26171600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr12:26163400-26168200	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr12:26163600-26170400	Weak transcription	Pancreas	Pancrea
10	chr12:26163800-26168200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr12:26163800-26168200	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr12:26164000-26168000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr12:26164200-26168200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr12:26164200-26168200	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr12:26164200-26168200	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr12:26164200-26170400	Weak transcription	Brain Angular Gyrus	brain
17	chr12:26164400-26168200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr12:26164400-26170400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr12:26164600-26170200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr12:26164600-26170400	Weak transcription	Brain Anterior Caudate	brain
21	chr12:26164600-26171600	Weak transcription	NH-A	brain
22	chr12:26164800-26168400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr12:26164800-26168600	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr12:26164800-26168800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr12:26164800-26169000	Weak transcription	Fetal Lung	lung
26	chr12:26164800-26169200	Weak transcription	NHLF	lung
27	chr12:26164800-26170400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr12:26164800-26170400	Weak transcription	Adipose Nuclei	Adipose
29	chr12:26164800-26170400	Weak transcription	Aorta	Aorta
30	chr12:26164800-26170400	Weak transcription	Left Ventricle	heart
31	chr12:26164800-26170400	Weak transcription	Lung	lung
32	chr12:26164800-26170400	Weak transcription	Ovary	ovary
33	chr12:26164800-26170400	Weak transcription	Psoas Muscle	Psoas
34	chr12:26164800-26170400	Weak transcription	Stomach Smooth Muscle	stomach
35	chr12:26164800-26170400	Weak transcription	Hela-S3	cervix
36	chr12:26164800-26170400	Weak transcription	HSMM	muscle
37	chr12:26164800-26170400	Weak transcription	NHEK	skin
38	chr12:26164800-26170600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr12:26164800-26173200	Weak transcription	HMEC	breast
40	chr12:26165000-26169200	Weak transcription	HUVEC	blood vessel
41	chr12:26165000-26169400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr12:26165000-26171600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr12:26165200-26168400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr12:26165200-26171400	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr12:26165800-26168400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr12:26166200-26170400	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr12:26167200-26170400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr12:26167200-26170400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr12:26167200-26170400	Weak transcription	Brain Substantia Nigra	brain
50	chr12:26167200-26170400	Weak transcription	Gastric	stomach

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