Variant report

Variant	rs73077176
Chromosome Location	chr12:26162446-26162447
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:26115121..26117506-chr12:26161572..26164104,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs12425863	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12426668	0.90[EUR][1000 genomes]
rs1495649	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1533244	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16929780	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16929815	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16929857	0.81[AMR][1000 genomes]
rs16929860	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16929894	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16929895	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16929904	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16929998	0.90[EUR][1000 genomes]
rs2343200	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3803008	0.81[AMR][1000 genomes]
rs4963643	0.87[AMR][1000 genomes]
rs4963644	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4963947	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs57082706	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs57791860	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73074872	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73074898	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73077103	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73077131	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73077152	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73077161	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73077179	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73079010	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73079021	0.81[AMR][1000 genomes]
rs73079023	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73079024	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73079069	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9804876	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898931	chr12:26123345-26192936	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:26145600-26163000	Weak transcription	Fetal Muscle Leg	muscle
2	chr12:26146200-26163000	Weak transcription	Lung	lung
3	chr12:26148000-26163600	Weak transcription	Aorta	Aorta
4	chr12:26150800-26163200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr12:26151000-26163000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr12:26152200-26162800	Weak transcription	HSMM	muscle
7	chr12:26154800-26163400	Weak transcription	HSMMtube	muscle
8	chr12:26155800-26163200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr12:26156000-26162800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr12:26156200-26163000	Weak transcription	Brain Cingulate Gyrus	brain
11	chr12:26156400-26162600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr12:26156400-26162600	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr12:26156400-26163000	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr12:26156400-26163400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr12:26156600-26162800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr12:26156600-26162800	Weak transcription	NH-A	brain
17	chr12:26156600-26163600	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr12:26158600-26162600	Weak transcription	HMEC	breast
19	chr12:26158800-26162600	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr12:26159400-26162800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr12:26160200-26162600	Enhancers	Stomach Smooth Muscle	stomach
22	chr12:26160400-26163000	Weak transcription	Right Ventricle	heart
23	chr12:26160600-26163000	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr12:26160600-26163000	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr12:26160600-26163000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr12:26160600-26163200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr12:26160600-26163200	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr12:26160600-26163200	Weak transcription	Pancreas	Pancrea
29	chr12:26160600-26163400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr12:26160600-26163600	Weak transcription	Fetal Stomach	stomach
31	chr12:26160600-26167000	Weak transcription	Gastric	stomach
32	chr12:26160600-26168000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr12:26160600-26168200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr12:26160600-26168200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr12:26160600-26168200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
36	chr12:26160600-26170400	Weak transcription	H9 Cell Line	embryonic stem cell
37	chr12:26160600-26170600	Weak transcription	Fetal Intestine Small	intestine
38	chr12:26160600-26171600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr12:26160800-26162600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr12:26160800-26162600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr12:26160800-26162600	Weak transcription	Brain Angular Gyrus	brain
42	chr12:26160800-26162600	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr12:26160800-26162600	Weak transcription	NHLF	lung
44	chr12:26160800-26162800	Weak transcription	H1 Cell Line	embryonic stem cell
45	chr12:26161400-26164800	Enhancers	Rectal Smooth Muscle	rectum
46	chr12:26161600-26164200	Enhancers	Fetal Heart	heart
47	chr12:26161600-26164600	Enhancers	Brain Anterior Caudate	brain
48	chr12:26161600-26167400	Enhancers	Skeletal Muscle Female	skeletal muscle
49	chr12:26161800-26162600	Enhancers	Osteobl	bone
50	chr12:26161800-26163400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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