Variant report

Variant	rs73077179
Chromosome Location	chr12:26162708-26162709
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:26115121..26117506-chr12:26161572..26164104,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs12425863	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12426668	0.90[EUR][1000 genomes]
rs1495649	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1533244	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16929780	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16929815	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16929857	0.81[AMR][1000 genomes]
rs16929860	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16929894	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16929895	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16929904	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16929998	0.90[EUR][1000 genomes]
rs2343200	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3803008	0.81[AMR][1000 genomes]
rs4963643	0.87[AMR][1000 genomes]
rs4963644	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4963947	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs57082706	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs57791860	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73074872	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73074898	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73077103	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73077131	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73077152	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73077161	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73077176	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73079010	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73079021	0.81[AMR][1000 genomes]
rs73079023	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73079024	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73079069	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9804876	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898931	chr12:26123345-26192936	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:26145600-26163000	Weak transcription	Fetal Muscle Leg	muscle
2	chr12:26146200-26163000	Weak transcription	Lung	lung
3	chr12:26148000-26163600	Weak transcription	Aorta	Aorta
4	chr12:26150800-26163200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr12:26151000-26163000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr12:26152200-26162800	Weak transcription	HSMM	muscle
7	chr12:26154800-26163400	Weak transcription	HSMMtube	muscle
8	chr12:26155800-26163200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr12:26156000-26162800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr12:26156200-26163000	Weak transcription	Brain Cingulate Gyrus	brain
11	chr12:26156400-26163000	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr12:26156400-26163400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr12:26156600-26162800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr12:26156600-26162800	Weak transcription	NH-A	brain
15	chr12:26156600-26163600	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr12:26159400-26162800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr12:26160400-26163000	Weak transcription	Right Ventricle	heart
18	chr12:26160600-26163000	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr12:26160600-26163000	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr12:26160600-26163000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr12:26160600-26163200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr12:26160600-26163200	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr12:26160600-26163200	Weak transcription	Pancreas	Pancrea
24	chr12:26160600-26163400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr12:26160600-26163600	Weak transcription	Fetal Stomach	stomach
26	chr12:26160600-26167000	Weak transcription	Gastric	stomach
27	chr12:26160600-26168000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr12:26160600-26168200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr12:26160600-26168200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr12:26160600-26168200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr12:26160600-26170400	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr12:26160600-26170600	Weak transcription	Fetal Intestine Small	intestine
33	chr12:26160600-26171600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr12:26160800-26162800	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr12:26161400-26164800	Enhancers	Rectal Smooth Muscle	rectum
36	chr12:26161600-26164200	Enhancers	Fetal Heart	heart
37	chr12:26161600-26164600	Enhancers	Brain Anterior Caudate	brain
38	chr12:26161600-26167400	Enhancers	Skeletal Muscle Female	skeletal muscle
39	chr12:26161800-26163400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr12:26161800-26164800	Enhancers	Breast Myoepithelial Primary Cells	Breast
41	chr12:26161800-26164800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr12:26161800-26164800	Enhancers	Right Atrium	heart
43	chr12:26161800-26165000	Enhancers	Colon Smooth Muscle	Colon
44	chr12:26162000-26162800	Enhancers	Hela-S3	cervix
45	chr12:26162000-26164800	Enhancers	Skeletal Muscle Male	skeletal muscle
46	chr12:26162200-26163200	Flanking Active TSS	NHDF-Ad	bronchial
47	chr12:26162200-26163400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr12:26162200-26164000	Weak transcription	Fetal Lung	lung
49	chr12:26162400-26163200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr12:26162400-26163800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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