Variant report

Variant	rs10774547
Chromosome Location	chr12:120862716-120862717
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11065108	0.89[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs11065109	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2076022	0.80[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs2516078	0.85[AFR][1000 genomes]
rs4766961	0.88[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs4766962	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4767891	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59701271	0.81[ASN][1000 genomes]
rs7970534	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10774547	COQ5	cis	Muscle Skeletal	GTEx

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:120827200-120875200	Weak transcription	Right Atrium	heart
2	chr12:120852400-120875200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr12:120856400-120866400	Weak transcription	Fetal Intestine Small	intestine
4	chr12:120860000-120863200	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr12:120860000-120863400	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr12:120862600-120863000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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