Variant report

Variant	rs11065108
Chromosome Location	chr12:120863484-120863485
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 7 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10774547	0.89[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs11065109	0.93[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs11065157	0.83[CHB][hapmap]
rs2076022	1.00[CEU][hapmap];0.89[CHB][hapmap];0.94[CHD][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];0.85[LWK][hapmap];0.95[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2516078	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4379896	0.80[ASN][1000 genomes]
rs4766961	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4766962	0.94[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs4767891	0.94[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs59701271	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs787818	0.85[JPT][hapmap]
rs7970534	0.93[AFR][1000 genomes];0.97[ASN][1000 genomes]

mRNA abundance (count:7)

SNP	Gene	Cis/trans	Tissue	Source
rs11065108	COQ5	cis	parietal	SCAN
rs11065108	GATC	cis	parietal	SCAN
rs11065108	RNF10	cis	lymphoblastoid	seeQTL
rs11065108	COQ5	cis	Muscle Skeletal	GTEx
rs11065108	NCRNA00173	cis	cerebellum	SCAN
rs11065108	TAOK3	cis	parietal	SCAN
rs11065108	CCDC62	cis	parietal	SCAN

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:120827200-120875200	Weak transcription	Right Atrium	heart
2	chr12:120852400-120875200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr12:120856400-120866400	Weak transcription	Fetal Intestine Small	intestine
4	chr12:120862800-120863800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr12:120863000-120863800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr12:120863200-120863800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr12:120863200-120863800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr12:120863200-120863800	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr12:120863200-120863800	Enhancers	Left Ventricle	heart
10	chr12:120863400-120863600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
11	chr12:120863400-120863800	Enhancers	H1 Cell Line	embryonic stem cell
12	chr12:120863400-120863800	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr12:120863400-120863800	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr12:120863400-120863800	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr12:120863400-120863800	Enhancers	Fetal Heart	heart
16	chr12:120863400-120863800	Enhancers	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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