Variant report

Variant	rs4766961
Chromosome Location	chr12:120862532-120862533
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 8 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10774547	0.88[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs11065108	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11065109	0.91[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs11065157	0.83[CHB][hapmap]
rs2076022	0.83[ASW][hapmap];1.00[CEU][hapmap];0.89[CHB][hapmap];0.94[CHD][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];0.85[LWK][hapmap];0.95[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2516078	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4379896	0.80[ASN][1000 genomes]
rs4766962	0.92[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs4767891	0.92[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs59701271	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs787818	0.85[JPT][hapmap]
rs7970534	0.91[AFR][1000 genomes];0.97[ASN][1000 genomes]

mRNA abundance (count:8)

SNP	Gene	Cis/trans	Tissue	Source
rs4766961	GATC	cis	parietal	SCAN
rs4766961	TAOK3	cis	parietal	SCAN
rs4766961	COQ5	cis	parietal	SCAN
rs4766961	DYNLL1	cis	multi-tissue	Pritchard
rs4766961	RNF10	cis	lymphoblastoid	seeQTL
rs4766961	CCDC62	cis	parietal	SCAN
rs4766961	COQ5	cis	Muscle Skeletal	GTEx
rs4766961	NCRNA00173	cis	cerebellum	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:120827200-120875200	Weak transcription	Right Atrium	heart
2	chr12:120852400-120875200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr12:120856400-120866400	Weak transcription	Fetal Intestine Small	intestine
4	chr12:120860000-120863200	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr12:120860000-120863400	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr12:120862400-120862600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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