Variant report

Variant	rs10774856
Chromosome Location	chr12:116849657-116849658
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:116847212..116851109-chr12:116861228..116866038,6	MCF-7	breast:
2	chr12:116849525..116852471-chr12:116871816..116874703,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10735091	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10774857	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10850627	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2393039	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4767403	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6490071	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7131792	0.91[EUR][1000 genomes]
rs7315837	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9300331	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:116842400-116853400	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr12:116842600-116850000	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr12:116844800-116862400	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr12:116846200-116850400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr12:116847000-116853000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr12:116847600-116849800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr12:116847800-116850000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr12:116847800-116850000	Enhancers	NHDF-Ad	bronchial
9	chr12:116848000-116853200	Weak transcription	Spleen	Spleen
10	chr12:116848400-116850000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr12:116848800-116852800	Weak transcription	Fetal Brain Male	brain
12	chr12:116848800-116853200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr12:116849000-116849800	Weak transcription	Placenta	Placenta
14	chr12:116849000-116850000	Enhancers	Stomach Smooth Muscle	stomach
15	chr12:116849000-116853200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr12:116849000-116853800	Weak transcription	A549	lung
17	chr12:116849000-116854000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr12:116849000-116858200	Weak transcription	Colon Smooth Muscle	Colon
19	chr12:116849200-116849800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr12:116849200-116849800	Enhancers	Adipose Nuclei	Adipose
21	chr12:116849200-116849800	Weak transcription	Fetal Lung	lung
22	chr12:116849200-116850000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr12:116849200-116850000	Enhancers	Monocytes-CD14+_RO01746	blood
24	chr12:116849200-116854000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr12:116849200-116858000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr12:116849600-116850000	Enhancers	Rectal Smooth Muscle	rectum
27	chr12:116849600-116853600	Weak transcription	Fetal Muscle Trunk	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links