Variant report

Variant	rs9300331
Chromosome Location	chr12:116856430-116856431
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:116843273..116846667-chr12:116853532..116856656,3	MCF-7	breast:
2	chr12:116855670..116857875-chr12:116931428..116933849,2	MCF-7	breast:
3	chr12:116807283..116809324-chr12:116853961..116856679,2	K562	blood:
4	chr12:116855904..116857605-chr12:116861971..116863958,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10735091	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10774856	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10774857	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10850627	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2393039	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2893678	0.85[AMR][1000 genomes]
rs4767403	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6490071	0.80[AMR][1000 genomes]
rs7131792	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7313332	0.83[AFR][1000 genomes]
rs7315837	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3440103	chr12:116856371-116856823	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:116844800-116862400	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr12:116849000-116858200	Weak transcription	Colon Smooth Muscle	Colon
3	chr12:116849200-116858000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr12:116850000-116860600	Weak transcription	NHDF-Ad	bronchial
5	chr12:116854200-116858200	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr12:116854200-116864000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr12:116854400-116858000	Weak transcription	Fetal Muscle Trunk	muscle
8	chr12:116854400-116858200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr12:116854400-116858200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr12:116854400-116858200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr12:116854400-116858400	Weak transcription	A549	lung
12	chr12:116854400-116859600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr12:116854400-116863600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr12:116854600-116858000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr12:116854600-116858000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr12:116854600-116858200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr12:116854600-116859800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr12:116854800-116858200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr12:116855000-116863200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr12:116855200-116858200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr12:116856200-116856800	Enhancers	Dnd41	blood
22	chr12:116856400-116856600	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr12:116856400-116856800	Enhancers	Primary B cells from peripheral blood	blood
24	chr12:116856400-116856800	Weak transcription	Right Atrium	heart

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