Variant report

Variant	rs10850627
Chromosome Location	chr12:116849038-116849039
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:116847212..116851109-chr12:116861228..116866038,6	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10735091	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10774856	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10774857	1.00[CEU][hapmap];0.89[CHB][hapmap];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17615178	1.00[CHB][hapmap];0.93[CHD][hapmap]
rs2393039	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4767403	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6490071	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7131792	1.00[CEU][hapmap];0.96[GIH][hapmap];0.88[TSI][hapmap];0.91[EUR][1000 genomes]
rs7315837	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.84[MEX][hapmap];0.89[TSI][hapmap];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9300331	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10850627	C12orf47	cis	parietal	SCAN

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:116842400-116853400	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr12:116842600-116850000	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr12:116844800-116862400	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr12:116846200-116850400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr12:116847000-116853000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr12:116847400-116849200	Enhancers	Fetal Thymus	thymus
7	chr12:116847600-116849800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr12:116847800-116849200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr12:116847800-116849600	Enhancers	Fetal Muscle Trunk	muscle
10	chr12:116847800-116849600	Enhancers	Skeletal Muscle Male	skeletal muscle
11	chr12:116847800-116850000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr12:116847800-116850000	Enhancers	NHDF-Ad	bronchial
13	chr12:116848000-116853200	Weak transcription	Spleen	Spleen
14	chr12:116848200-116849200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr12:116848200-116849200	Enhancers	Muscle Satellite Cultured Cells	--
16	chr12:116848400-116849200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr12:116848400-116849200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr12:116848400-116849200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr12:116848400-116849200	Enhancers	Fetal Lung	lung
20	chr12:116848400-116850000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr12:116848600-116849200	Enhancers	Aorta	Aorta
22	chr12:116848600-116849200	Enhancers	NHLF	lung
23	chr12:116848800-116849200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr12:116848800-116849200	Enhancers	Primary neutrophils fromperipheralblood	blood
25	chr12:116848800-116849200	Enhancers	Primary B cells from peripheral blood	blood
26	chr12:116848800-116849200	Flanking Active TSS	Adipose Nuclei	Adipose
27	chr12:116848800-116849200	Enhancers	GM12878-XiMat	blood
28	chr12:116848800-116849200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
29	chr12:116848800-116852800	Weak transcription	Fetal Brain Male	brain
30	chr12:116848800-116853200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr12:116849000-116849200	Enhancers	Rectal Smooth Muscle	rectum
32	chr12:116849000-116849200	Enhancers	Osteobl	bone
33	chr12:116849000-116849800	Weak transcription	Placenta	Placenta
34	chr12:116849000-116850000	Enhancers	Stomach Smooth Muscle	stomach
35	chr12:116849000-116853200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr12:116849000-116853800	Weak transcription	A549	lung
37	chr12:116849000-116854000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr12:116849000-116858200	Weak transcription	Colon Smooth Muscle	Colon

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