Variant report

Variant	rs10774881
Chromosome Location	chr12:117111612-117111613
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:117110752..117115888-chr12:117118566..117122770,6	MCF-7	breast:
2	chr12:117105037..117107604-chr12:117110461..117113567,3	MCF-7	breast:
3	chr12:117111390..117112172-chr12:117146786..117147307,2	MCF-7	breast:
4	chr12:117104915..117106831-chr12:117109752..117111659,2	K562	blood:
5	chr12:117093937..117096401-chr12:117110175..117113258,3	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10774882	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10850700	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10850701	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17500613	1.00[ASN][1000 genomes]
rs2393083	1.00[ASN][1000 genomes]
rs6490084	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7132520	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7298460	1.00[ASN][1000 genomes]
rs7308011	0.90[EUR][1000 genomes]
rs7314274	1.00[ASN][1000 genomes]
rs73218427	1.00[ASN][1000 genomes]
rs73218429	1.00[ASN][1000 genomes]
rs7957270	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7977117	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832523	chr12:117090343-117273810	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:117104800-117113800	Weak transcription	Lung	lung
2	chr12:117110000-117115800	Enhancers	Primary hematopoietic stem cells	blood
3	chr12:117110200-117112000	Enhancers	Primary B cells from cord blood	blood
4	chr12:117110200-117112800	Enhancers	Primary B cells from peripheral blood	blood
5	chr12:117110400-117111800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr12:117110400-117112000	Flanking Active TSS	Dnd41	blood
7	chr12:117110600-117112000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
8	chr12:117110600-117113200	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr12:117110800-117111800	Enhancers	Sigmoid Colon	Sigmoid Colon
10	chr12:117110800-117112600	Enhancers	Adipose Nuclei	Adipose
11	chr12:117111000-117111800	Enhancers	Primary neutrophils fromperipheralblood	blood
12	chr12:117111000-117111800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
13	chr12:117111000-117111800	Enhancers	Placenta	Placenta
14	chr12:117111000-117112200	Enhancers	Primary T cells fromperipheralblood	blood
15	chr12:117111000-117112200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
16	chr12:117111000-117112200	Enhancers	Primary T killer memory cells from peripheral blood	blood
17	chr12:117111000-117112200	Enhancers	Rectal Mucosa Donor 29	rectum
18	chr12:117111000-117113600	Enhancers	A549	lung
19	chr12:117111200-117111800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr12:117111200-117112000	Enhancers	Primary T helper naive cells from peripheral blood	blood
21	chr12:117111200-117112000	Enhancers	Primary T helper cells fromperipheralblood	blood
22	chr12:117111200-117112200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
23	chr12:117111200-117112200	Enhancers	Fetal Thymus	thymus
24	chr12:117111200-117112400	Enhancers	Primary T helper cells PMA-I stimulated	--
25	chr12:117111200-117112800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr12:117111200-117113000	Enhancers	Monocytes-CD14+_RO01746	blood
27	chr12:117111200-117113600	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr12:117111200-117114600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr12:117111200-117114600	Weak transcription	Hela-S3	cervix
30	chr12:117111200-117115000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr12:117111400-117112000	Enhancers	Primary T cells from cord blood	blood
32	chr12:117111400-117112200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
33	chr12:117111400-117112200	Enhancers	Thymus	Thymus
34	chr12:117111400-117114600	Enhancers	Primary hematopoietic stem cells short term culture	blood
35	chr12:117111400-117114600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr12:117111400-117114600	Enhancers	GM12878-XiMat	blood
37	chr12:117111600-117111800	Enhancers	Left Ventricle	heart
38	chr12:117111600-117111800	Enhancers	Spleen	Spleen

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