Variant report

Variant	rs7314274
Chromosome Location	chr12:117093441-117093442
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10774881	1.00[ASN][1000 genomes]
rs10774882	1.00[ASN][1000 genomes]
rs10850701	1.00[ASN][1000 genomes]
rs11503150	0.84[EUR][1000 genomes]
rs17500613	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2393083	1.00[ASN][1000 genomes]
rs6490084	1.00[ASN][1000 genomes]
rs7132520	1.00[ASN][1000 genomes]
rs7298460	1.00[ASN][1000 genomes]
rs73218427	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73218429	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7957270	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1794859	chr12:117087267-117103935	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv560343	chr12:117087497-117096007	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv1010818	chr12:117089656-117093463	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv832523	chr12:117090343-117273810	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:117088600-117094000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr12:117088600-117094000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr12:117089400-117096000	Weak transcription	Thymus	Thymus
4	chr12:117091600-117096000	Weak transcription	Right Atrium	heart
5	chr12:117093000-117093800	Enhancers	H9 Cell Line	embryonic stem cell
6	chr12:117093000-117094800	Enhancers	Fetal Stomach	stomach
7	chr12:117093200-117093800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr12:117093200-117094000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr12:117093400-117093600	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr12:117093400-117093600	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr12:117093400-117093600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr12:117093400-117093800	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr12:117093400-117094000	Weak transcription	Lung	lung
14	chr12:117093400-117094200	Enhancers	Fetal Thymus	thymus

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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